Rhizobium johnstonii: RL0104
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Entry
RL0104 CDS
T00402
Name
(GenBank) putative ribonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rle
Rhizobium johnstonii
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rle03016
]
RL0104
Enzymes [BR:
rle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RL0104
Transfer RNA biogenesis [BR:
rle03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RL0104
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
DUF2017
Motif
Other DBs
NCBI-ProteinID:
CAK05592
UniProt:
Q1MN60
LinkDB
All DBs
Position
132535..133161
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AA seq
208 aa
AA seq
DB search
MAATIRYHEGDISAADVARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAG
QKEAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFSVTTTPVFCTKIASRLIRTYTDRHGL
KDNLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDH
ATACFEFLPTRAKLDLLGWEEADIFAHS
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaccatacgttatcacgaaggcgatatttccgcggccgacgttgcccgctac
accggcgcgattgcgatcgacaccgaaacgctcggcctggtgccgcgccgcgatcggctc
tgcgtcgtccagctttcgccgggtgacggcaccgccgatatcatccgcatcgccgccggt
cagaaagaggcgcccaatctcgtcgccctgcttgaagaccccacccatcagaagatcttt
cattacggccgctttgatattgccgtgctcttccataccttcagcgtcacgacgacaccg
gttttctgcaccaagatcgcctcgcgtctgatccggacctatacggatcgccatggtctc
aaggacaatctcaaggagatgctcgacgtcgacgtctccaaggcacagcaatcttccgat
tgggcggccgagaggctgtccccggcccagctcgaatatgccgcctccgacgtgctttat
ctgcatgcgttgcgcgataagctgacggaacggctgatccgcgacggccgctacgatcat
gcgacggcctgcttcgaattcctgccgacccgcgccaagctcgacctgctcggctgggaa
gaggccgatatcttcgcccatagctga
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