Rhizobium johnstonii: RL0134
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Entry
RL0134 CDS
T00402
Symbol
dnaX
Name
(GenBank) putative DNA polymerase III
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
rle
Rhizobium johnstonii
Pathway
rle03030
DNA replication
rle03430
Mismatch repair
rle03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RL0134 (dnaX)
03430 Mismatch repair
RL0134 (dnaX)
03440 Homologous recombination
RL0134 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rle03032
]
RL0134 (dnaX)
03400 DNA repair and recombination proteins [BR:
rle03400
]
RL0134 (dnaX)
Enzymes [BR:
rle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RL0134 (dnaX)
DNA replication proteins [BR:
rle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RL0134 (dnaX)
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RL0134 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DUF3646
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
AAA_16
AAA_30
AAA_19
AAA_14
AAA_5
AAA_18
RuvB_N
AAA_24
TsaE
AAA_assoc_2
SRP54
SKI
DUF815
Rad17
RNA_helicase
CbiA
AAA_2
ABC_tran
nSTAND3
AAA_28
VapE-like_dom
Motif
Other DBs
NCBI-ProteinID:
CAK05623
UniProt:
Q1MN29
LinkDB
All DBs
Position
complement(164470..166347)
Genome browser
AA seq
625 aa
AA seq
DB search
MSDTERQSKDAASTGTGYRVLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLT
GVRGVGKTTTARILARALNYKTSEIDKPTIDLRAPGEHCQAIMEGRHVDVIEMDAASHTG
IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR
KVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEPDALAMIARAAEGSARDGLSL
LDQAIAHGAGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVV
VLTDLADFTHLVTRLKYVPDAANDPSLSEVERTKAAEFAKCVAVTTLSRIWQMLLKGIPE
TEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSGDNTGPRPSSSPSGNGGGSGTR
VPYQSSVAARAAETAPSQPPSSAPVAMLRAVPSSQSETMAVGRIEPKPAEAPKPLVPVNS
VNDIVNLATEKRDPKLKAMVRTFLRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKEWTGI
HWIVSLSRDEGQPTLVEAEARTREQHVIDARQDPDVAAILAHFPGAKIIDVRVRAPEPEE
EGEATPPAAAESEEGDILPGDDIEF
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccgagcgacaatcaaaagatgccgcctcgacgggcaccggataccgagtg
ctggctcgcaaataccgccccaaggatttcacggacctgatggtcggccaggagccgatg
gtccgcaccctcaccaacgccttcgagaccggccgcatcgcgcaagcctacatgctgacc
ggcgtgcgcggcgtcggcaagacgacgacggcgcgcatcctggcgcgggcgctgaactac
aagacatcggaaatcgacaagccgacgatcgaccttcgcgcgccgggcgaacactgccag
gcgatcatggaaggccggcatgtcgacgtgatcgagatggacgccgcctcccataccggt
atcgacgatatccgtgagatcatcgagcaggtgcgctaccggccggtttcggcgcgctac
aaggtctatatcatcgacgaagtgcacatgctgtcgacgcaggccttcaacggcctgctg
aagacgctggaagagccgcccgagcatgtgaaattcatcttcgccaccaccgagatccgc
aaggtgccgatcaccgtgctgtcacgctgccagcgcttcgacctgcgccgcatcagcgcc
tccgatctcgtcggactgttcaccacgatcgcggccaaggaaggcatcgaggcggaaccg
gacgcgctggcgatgatcgcgcgtgctgccgaaggctcggcacgcgacggcctgtcgctg
ctcgaccaggcgatcgctcatggcgcaggcgtcgtgcaggcggaagccgtgcgcggcatg
ctcggccttgccgatcgcgcccggatcgtcgatctcttccagcatatcgtcaaaggcgat
gtggccgctgccctcggcgagttccagaaccaatacgaagccggcgccaatccggtggtg
gtgctgaccgatcttgccgatttcacccatctggtgacgcggttaaaatatgtgccggat
gcggcaaacgatccttcgctcagcgaggtcgaacgcactaaggcagcggaatttgcgaag
tgtgttgcagtgacgacgctgtcgcgcatctggcagatgctgctcaagggcattccggaa
acggaaggctcgtcgcggacggcaggggcggccgagatggtgctgatccggcttgcgcat
gccgcgcatctgccggcgcccgaagacgcggcgcggcggcttgccgaattttccggtgac
aataccggtccgcggccctcctcctcgccgtccggcaatggcggcggcagcggtacacgg
gttccctatcagagcagtgtcgcggcgcgtgcagcggaaaccgcgccgagccagccaccc
tcttccgcgccggtggcgatgctgcgggccgtgccgagcagccagtcggagacgatggct
gtcgggcggatcgagccgaaaccggcggaagcaccgaagccgctcgtcccggtcaattcg
gtcaatgatatcgtcaacctcgccaccgagaaacgcgatccgaagctgaaggcgatggtg
cgcaccttcctgcgcccggttcggatcgaagccggccggctcgacgtcagcctggctccc
ggtgcgccgaccacactgctcaacgagctcgccgtcaagctgaaggaatggaccggcatc
cattggatcgtcagcctcagtcgcgacgagggccagccgacgctggtcgaagcggaggcc
aggacgcgggaacagcatgtgatcgacgcgcgccaggaccctgacgtggcggcaatcctt
gcacattttcccggtgccaagatcatcgacgtgcgcgtacgggcgcccgaaccggaggag
gaaggcgaggcgacgccgccggccgccgccgaatccgaggaaggtgacatcctgccgggc
gacgacatagaattctga
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