Rhizobium johnstonii: RL0160
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Entry
RL0160 CDS
T00402
Symbol
polA
Name
(GenBank) putative DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rle
Rhizobium johnstonii
Pathway
rle03030
DNA replication
rle03410
Base excision repair
rle03420
Nucleotide excision repair
rle03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RL0160 (polA)
03410 Base excision repair
RL0160 (polA)
03420 Nucleotide excision repair
RL0160 (polA)
03440 Homologous recombination
RL0160 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rle03032
]
RL0160 (polA)
03400 DNA repair and recombination proteins [BR:
rle03400
]
RL0160 (polA)
Enzymes [BR:
rle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RL0160 (polA)
DNA replication proteins [BR:
rle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RL0160 (polA)
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RL0160 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RL0160 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
DUF4350
PUA_4
HHH
IMS_HHH
Transposase_20
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
CAK05649
UniProt:
Q1MN03
LinkDB
All DBs
Position
192994..196044
Genome browser
AA seq
1016 aa
AA seq
DB search
MPNSIWTSSHARAIHARMKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCN
MLWKLLRDARNTDVGVTPTHLAVIFDYSARTFRKDLYDAYKANRSAPPEELIPQFGLIRE
ATRAFNLPCIETEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKD
KQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLER
ATEIKQVKRRETILANIDMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTME
FTTLTRRVAEACDCDASAIEPAIVRIEWGEKARGPDLDAAEPEPVAGGIPDVSGESVPVP
PRAKAKTAVEGAFSPADLAKARAEAFATLPFDHSAYVTIRDLATLDRWIADARATGLVAF
DTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGLAENQIP
MGDALARLKALLEDESILKVAQNLKYDYLLMKRYGIETRSFDDTMLISYVLDAGTGAHGM
DPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAA
AGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFN
IGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKS
TYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPG
HKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAK
AINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETI
FGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRM
LLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDEAH
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgccgaactctatatggacctcgtcccatgcccgcgctatccatgcacgcatgaaaaaa
ggcgatcacctcttcctagtcgatggttccggattcatcttccgggcgtttcatgcactg
ccgccgctgacccgcaagaccgacggcctgccgatcggcgccgtgtccggtttctgcaac
atgctgtggaagctgctgagggacgcgcgcaataccgatgtcggcgtgacgccgacacat
cttgccgtcatcttcgattattccgccaggacgtttcgcaaggatctctacgacgcctac
aaggcgaaccgttccgcaccgccggaggagctcatcccgcaattcggcctcatccgcgag
gcgactcgcgccttcaatctgccctgcatcgagaccgagggcttcgaggccgacgacatc
atcgccacctatgcccgccaggccgaagcgaccggcgccgatgtcaccatcgtctcctcc
gacaaggatctgatgcagctcgtcagccccaatgtccatatgtatgacagcatgaaggac
aagcagatcggcattcccgatgtcgtcgagaaatggggcgtgccgccggaaaagatgatc
gacctgcaggcgatgaccggcgattcggtcgacaatgttcccggcattcccggcatcggc
ccgaagaccgccgcccaactgctcgaggaatacggcgatctcgatacgctgctcgaacgc
gccaccgagatcaagcaggtcaagcgccgtgagacgatcctcgccaatatcgatatggcc
aggctctcgcgcgacctcgtgcggttgcgcaccgatgtgccgctcgatctcgatctcgac
gcgttggtgctggaaccgcagaacggtccgaagctgatcggcttcctgaagacgatggaa
ttcaccacgctgacgcgccgcgtcgccgaagcctgcgattgcgatgccagcgccatcgag
ccggcgatcgtccgcatcgaatggggtgagaaggcccgcggcccggatctcgatgcggcc
gagcccgagcccgttgccggcggcatccccgacgtttccggcgaatccgtgccggtgccg
ccgcgtgcaaaggcaaagaccgccgtcgaaggcgccttttcgcccgccgatcttgccaag
gcgcgggccgaggcctttgcgacgctgcccttcgatcattcggcctatgtcacgatccgc
gatctggcgacgctcgaccgttggatcgccgatgcgcgcgccaccggcctcgttgctttc
gataccgagaccacctcgctggatgcgatgcaggccgagcttgtcggcttttcgctggcg
atcgccgacaatacggccgatcccaccggcacgaagatccgcgccgcctatgtgccgctc
gtccataagaacggcgtcggcgatctgctcggcggcggccttgccgaaaaccagatcccg
atgggcgatgccttggcgcggctgaaggcattgctggaggacgaatctattctcaaggtc
gcccagaacctgaaatacgattacctgctgatgaagcgctacggcatcgagaccaggagt
ttcgacgacacgatgctgatctcctacgtgctcgatgccggcaccggcgcgcatggcatg
gacccgctctcggaaaaattcctcggccatacgccgatcccctacaaggacgtggccggc
agcggcaaggcgaatgtcaccttcgatctggtcgatatcgaccgcgccacccactatgcc
gccgaagatgccgacgtgacgctgcgcctctggctggtgctgaagccgcggctggcggcg
gcgggattaaccagcgtctatgaacggctggagcggccgctattgccggtgctggcgcgc
atggaagcgcgcggcatcaccgtcgaccggcagatcctgtcgcgcctctccggcgagctg
gcccagagtgcagcaaggctggaggacgagatttacgtgctggccggcgagcgtttcaat
atcggttcgccgaagcagctgggcgatatcctgttcggcaagatgggcctttccggcggc
agcaagacgaagacaggccaatggtccacctccgcccaggtactcgaggatctggccgcc
gccggtttcgaattgccgcgcaagatcgtcgactggcgccaggtcaccaagctgaaatcc
acctataccgacgcgcttccgggttacgttcaccccgagacaaagcgggtccacacctcg
tactcgctggcatcgacgaccacggggcgtctgtcgtcgtccgagccgaacctgcagaac
attccggtgcgcaccgcagaaggccgcaagatccgcaccgccttcatctcgacgcctggc
cacaagctgatctccgccgactacagccagatcgaactgcgcgtgcttgcccatgtggcc
gagatcccgcaactgaccaaggccttcgaagatggcgtcgacatccatgccatgacggca
tcggaaatgttcggcgtgccggtggaaggcatgccgggcgaggtgcgccgccgcgccaag
gcgatcaatttcggcatcatctacggcatctcggccttcgggcttgccaatcagctttcg
atcgagcgttcggaagccggcgactacatcaagaagtatttcgaacgtttccccggcatc
cgcgactatatggaaagccgaaaggccatggcgcgcgacaagggttacgtcgaaacgatc
ttcggtcgccgcatcaactatcccgaaatccgctcttccaatccatccgtgcgtgccttt
aacgagcgtgcggccatcaacgcgccgatccagggctcggctgccgacgtcattcgccgg
gcaatgatcaagatagagccggcgcttgttgaagtcggccttgccgatcgcgtccgcatg
ctgctgcaggtgcatgacgaactcatcttcgaggtcgaggacgaggatgtcgaaaaggcg
atgccggtcatcgtctcggtcatggaaaacgccaccatgccggcgctggaaatgcgcgtg
ccgctgagggtcgatgcacgcgccgccaccaattgggacgaggcacactaa
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