Rhizobium johnstonii: RL0422
Help
Entry
RL0422 CDS
T00402
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rle
Rhizobium johnstonii
Pathway
rle02020
Two-component system
rle02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RL0422 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RL0422 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rle03021
]
RL0422 (rpoN)
Transcription machinery [BR:
rle03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RL0422 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
PP_kinase_C
Motif
Other DBs
NCBI-ProteinID:
CAK05913
UniProt:
Q1MM89
LinkDB
All DBs
Position
458791..460350
Genome browser
AA seq
519 aa
AA seq
DB search
MALSANLFLRQTQSLVMTPQLMQSIQLLQMTHFELNQFIALEVEKNPLLEFPSNDGEAGG
ERGEAEDGEYAHQPEDAGSDDGYDNRTEALSSDWYDNGGSASTSRLNDELDANYTNVFPD
DGAPQRLDAPELVSQWKSMPGSGEGADYDLDDFVAGQVSLRDHLAQQIPFVLPDMADRLI
AQNFVDQLDDCGYLQADIVEAGERLGTSLAQAERVLATLQSLDPPGVFARSLAECLAIQL
RQKDRYDPAMQALVENLELLARRDFATLKRLCGVDEEDLLDMLGEIRQLNPKPGSGFEAG
VSEAITPDVVVRHASDGGWLVELNPDTLPRVLVNQSYFSRVTKNGEDHAFLSDCLQSANW
LTRSLDQRAKTIMKVASEIVRQQDAFLLHGVDHLRPLNLKTVAEAIKMHESTVSRVTSNK
YMLTPRGLFELKYFFTVSISAVAGGDSHSAEAVRHKIRALILQESPEAVLSDDDIVDMLK
KGGVDLARRTVAKYREAMNIASSVQRRREKRALAKVAGF
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcactgtccgccaatcttttcctgcgccagacccagtctttggtgatgacaccgcaa
ctgatgcaatccatccagttgctgcagatgactcatttcgaactcaaccagtttatcgcc
ctggaagtggagaagaacccgctactcgaatttccgtcgaatgacggcgaggcgggcggt
gaacgcggcgaagccgaagatggagaatatgctcatcagccggaggatgccgggtcggac
gatggctacgacaaccgcaccgaggcgctctccagcgactggtatgacaatggcggcagc
gccagtaccagccggctgaacgacgaactcgacgccaattacaccaatgtctttcctgat
gacggtgccccgcagcgcctcgatgcgccggagctcgtcagccagtggaagtcgatgccg
ggcagcggcgagggcgccgactatgatctcgacgatttcgtcgccggccaagtgtcgctg
cgtgatcatctcgcccagcagatccccttcgtcctgcctgacatggccgaccggctgatc
gcgcagaatttcgtcgaccagctcgacgactgtggttatctgcaggccgatatcgtcgag
gcgggcgagaggctgggcacgagcctcgcacaggccgagcgcgtgcttgctacgctccag
agccttgatccgccgggtgttttcgcccgtagcctcgccgaatgcctggcgatccagctc
aggcagaaggaccgatacgacccggccatgcaggctctggtcgaaaacctcgaactgctg
gcccggcgcgactttgccacgttgaagcggctctgcggcgtcgacgaggaagatcttctg
gacatgctcggcgagatccgtcagctcaatcccaagcccggcagcggcttcgaagcgggt
gtttccgaagcgatcacgccggatgtagtcgtcaggcacgcctcggacggcggctggctg
gtcgagctcaatccggatacgctgccgcgcgtgctggtcaaccagtcctatttttcccgt
gtgacgaagaacggcgaggaccacgccttcctctccgattgcctgcagagcgccaactgg
ctgacccgcagcctcgaccagcgggcaaaaaccatcatgaaggtggcaagcgaaatcgtc
cgccagcaggacgccttcctgctgcacggcgtcgatcacctgcgcccgctgaacctgaaa
acggtcgccgaggcaatcaagatgcatgaatccaccgtcagccgcgtcacgtcgaacaaa
tatatgctgacgccgcgcggcctcttcgaactcaaatatttcttcaccgtctcgatcagc
gccgtcgccggcggcgacagccattcggccgaggccgtgcgtcacaagatccgcgcgctg
atcctgcaggagagcccggaggcggtgctttccgacgacgatatcgtcgacatgctgaag
aagggcggcgtcgatctcgcccgccgcaccgttgcgaaataccgggaggcaatgaacatc
gcctcgtcggtccagcgccgccgcgagaagcgggcgctcgccaaggtcgcgggcttctga
DBGET
integrated database retrieval system
