Rhizobium johnstonii: RL1008
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Entry
RL1008 CDS
T00402
Name
(GenBank) putative GGDEF/EAL transmembrane sensory box protein
Organism
rle
Rhizobium johnstonii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_3
CHASE
GTP_EFTU_D3
DUF2514
Motif
Other DBs
NCBI-ProteinID:
CAK06505
RhizoBase:
RL1008
UniProt:
Q1MKK0
LinkDB
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Position
complement(1089809..1092949)
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AA seq
1046 aa
AA seq
DB search
MLKNSRVSFLVSSLVALVVIMVGFGLDQANTASHVRELRIRTENETNLIRARVMAEINMD
LSVVRDLTNLISVSAANGEEMERQINWLLIQNPSFIHIAVAPDFIIRDIHPAQSGNERIG
RDVREALFFRQAITGATGNQSARFYGPISTEGRDAFAIFFPVYVKENGQRRIWGAVEVAI
DQTMFYQATGLMPARDRENQERYPHLGHLSIAIRDIGLPTAAKAPPPAPFFGSSDIDGKD
PMRQKIGFAGGKWELSAVPNSGWNAIPENRTELRLIIVAAGFIIIVPIFFATLLLGERNR
NITALETREAKLLELSQRLNLALESSNIGIWELEDHSSSLLWDARAAALHGKAAAEGSRV
LDEWLAAILPEDRETAEVHFFSCSIAGAACTAQYRILLGNGGIRHLRSVGAFYTDAGGVS
KTIGIVWDVTADAETTDTLRKAKDTSEVKNAELELALEELSSREGQLAELSSRLDLALNS
YQCGIWEARPGLGGSIWNERMHELYGLAPRNGFMTEETWLGCIHPEDRALALESARHFKR
NGDTHTLVCRVIVDDGSVRYVRSVGKVHQTGTGEMKIMGIAFDATEDVLMTIRLKAAKDE
AVAKNIELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDR
FKDINDTLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTR
IIEEMRQPIDFQGFSCRCGVSIGIALANGIHVDARKVLINADIALYRAKSMGRNRFEFFN
HNLQADIINTKRTADEILAGIDNGEFTAWYQPQFCARTMELTGVEALVRWNHPSKGLLTP
DKFLRIADEINVVQMLDRIVLETALRDKVRWTARDIVVPKVSVNVSARRLHDGSLLESLA
DLHIRPGEISFELVESIFLDESEDVVSQNLERIKALGIDIEIDDFGTGHTSIVSLLKLKP
KRLKIDRQLVQPIVNASQERALVSSIIEIARSLGVETVAEGVETAAHAALLRDLGCDILQ
GFAFSRPLSFDDFTNEATGTGWRLAS
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
gtgttgaagaatagccgcgtctcgtttctggtttcctcgcttgtcgccctcgtcgtcatc
atggtcggcttcgggctcgaccaggccaatactgcgtctcatgtgcgcgaacttcgtatc
cgcaccgaaaacgagacgaacctcatccgcgcccgcgtcatggccgagatcaatatggac
ctcagcgtcgtgcgcgacctgacgaacctgatctccgtcagcgcggcaaacggggaggag
atggagcgccagatcaactggctgctgatccagaacccgtctttcattcatatcgccgtc
gcgcctgatttcatcatccgcgacatccacccagcgcagtccggcaatgagcggatcggc
cgcgacgtgcgcgaggcgctcttctttcgccaggcgataaccggcgcgaccggcaaccag
tcggcgcgcttctacggcccgatcagcaccgaaggccgggacgcctttgccatcttcttc
ccggtttacgtcaaggagaatggccagcggcgaatctggggggcggtcgaagtcgccatc
gaccagacgatgttctaccaggcgaccgggctgatgccggcacgcgaccgcgaaaaccag
gagcgctatccgcatctcggccatctttcgatcgccattcgcgatatcggcttgccgacc
gccgccaaagctcctccccccgcgccgttcttcgggtcctccgatatcgacggcaaggat
ccgatgcgccagaagatcggctttgccggcggcaagtgggagctttctgccgtgccgaac
agcggctggaacgcgatacccgaaaaccgcaccgagctgcgcctgatcatcgttgccgcc
ggcttcatcatcatcgtgccgatcttcttcgcgaccctgctgctcggcgagcgcaatcgc
aacatcaccgcgctggaaacgcgcgaggcaaaactgctggaactatcgcagcggctgaac
ctggcgctggaatcctccaatatcggcatctgggagctggaggatcattcgagcagcctg
ctctgggacgcgcgcgctgcagccctgcacggcaaagcggcggcagaaggaagccgggtg
ctcgacgaatggctggcggcgatcctgcccgaggaccgtgaaaccgccgaagtgcatttc
ttcagctgcagcattgcgggtgctgcctgcacggcgcagtaccggatcctgttaggcaat
ggcggcatccgccacctgcgctcggtcggcgccttctatacggatgccggcggcgtcagc
aagacgatcggcatcgtctgggacgtgaccgccgatgctgagaccaccgacacgctgcgc
aaggccaaggatacgagcgaggtcaagaatgccgagctggagctggcgcttgaagagctg
tcgagccgcgaggggcaactcgccgagctttccagccggctcgacctggcgctcaattcc
tatcagtgcggcatatgggaggctcggccgggcctcggcggctcgatctggaacgagcgg
atgcacgagctctatggccttgcgccgcgcaacggcttcatgaccgaagagacctggctt
ggctgcatccaccccgaggatcgggccttagcgctcgaaagcgcgcgccacttcaagcgc
aacggcgacacgcacaccctcgtctgccgcgtgatcgtcgacgacggctcggtgcgctat
gtgcgctcggtcggcaaggtccaccagacggggaccggcgagatgaagatcatgggcatc
gccttcgacgccaccgaagacgtgctgatgacgatccggctgaaggcggccaaggacgag
gcggtcgccaagaatatcgagctcgagcttgtcaagaacaggatcgagcacaattcgctg
cacgatccgctgaccgcactcgccaaccgccgcaagctcgatatcgcactggaaagtctg
acccatgacggtcgccagcagcggcagaaattctcgatcctgcacatcgacctcgaccgc
ttcaaggacatcaacgatacgctcggccatgcggccggcgatgcgatgctggtgcacgcc
tcgaaggtgcttgccaagaatgtccgcggcagcgacatcgtcgcgcgcatcggcggcgac
gagttcgtcattctggcactcgacgtcggcgacaaagagatggcgcagctttcgacgcgg
atcatcgaggagatgcgccagccgatcgatttccagggcttttcctgccgctgcggcgtg
tcgatcggcattgcgctcgccaacggcatccatgtcgatgcgcgcaaggtgctgatcaat
gccgatatcgcgctctaccgcgccaagagcatgggccgcaaccgcttcgaattcttcaat
cacaatctccaggccgatatcatcaacaccaagcgcaccgccgacgagatccttgccggc
atcgacaatggcgaattcaccgcatggtatcagccgcaattctgcgcccggacgatggaa
ctgacgggcgtcgaggcgctggtgcgctggaaccacccgtccaaggggctgctgacaccc
gacaagttcctgcgcattgccgacgagatcaatgtcgtgcagatgctcgaccggatcgtt
ctggaaacggcgctgcgcgacaaggtgcgctggacggcgcgcgacattgtggtgcccaag
gtctcggtcaatgtttcggcacggcggctgcatgacggcagcctgttggaatcactcgcc
gacctgcatatccgccccggcgaaatctccttcgaactggtggaatcgatcttcctcgac
gagagcgaggacgtcgtctcgcagaatctcgagcgcatcaaggcgctcggcatcgatatc
gagatcgacgatttcggcaccggccatacctcgatcgttagcctgttgaagctgaagccc
aagcggctgaagatcgaccgccagctggtgcagccgatcgtcaatgcctcgcaggagcgc
gcactcgtcagctcgatcatcgaaatcgcccgctcgctcggcgtcgagacggtggccgaa
ggggtggagacggcggcacatgccgcactgctgcgcgatctcggctgcgatatcctccag
ggctttgccttctcgcggccgctctccttcgacgatttcaccaacgaagccacaggaacg
gggtggcggctggcgtcctga
DBGET
integrated database retrieval system
