KEGG   Rhizobium johnstonii: RL2284
Entry
RL2284            CDS       T00402                                 
Symbol
hfq
Name
(GenBank) putative host factor protein
  KO
K03666  host factor-I protein
Organism
rle  Rhizobium johnstonii
Pathway
rle02024  Quorum sensing
rle03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rle00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RL2284 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RL2284 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rle03019]
    RL2284 (hfq)
   03036 Chromosome and associated proteins [BR:rle03036]
    RL2284 (hfq)
Messenger RNA biogenesis [BR:rle03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     RL2284 (hfq)
Chromosome and associated proteins [BR:rle03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    RL2284 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: CAK07776
UniProt: Q1MGZ1
LinkDB
Position
2406959..2407201
AA seq 80 aa
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
ISTIMPGQPMQMFESEEAAS
NT seq 243 nt   +upstreamnt  +downstreamnt
atggcggaacgttctcagaatcttcaggacttatttctcaatactgttcgcaagcaaaag
atttccctgacaatctttctgatcaacggcgtgaaactcacgggcgttgttacgtctttt
gacaatttctgtgttcttcttcgccgtgacggccattcgcagctcgtgtataagcatgcg
atctcgacgatcatgccgggccagcccatgcagatgttcgagagcgaagaagcagcgtcc
taa

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