Rhizobium johnstonii: RL2386
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Entry
RL2386 CDS
T00402
Symbol
mfd
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rle
Rhizobium johnstonii
Pathway
rle03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RL2386 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rle03400
]
RL2386 (mfd)
Enzymes [BR:
rle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RL2386 (mfd)
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RL2386 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
UB2H
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAK07876
UniProt:
Q1MGP3
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All DBs
Position
2510224..2513724
Genome browser
AA seq
1166 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTIGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSKL
VLDYYDARLNSGQPAKGMTQGTPYKPVTPGQLYLDSKLFAKTLDALGAIRISPFNEHEGE
ARRVVNVDARQGQRWARANAEGGGDAERINIFDVVVKHIADRRAAGAKVLVTAWTEGSLE
RLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDLVVIGEQDILGDRM
VRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYADEA
KLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTR
HAPMLTTPEGLYDEFAARFPYDETEDQENAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVA
LRAAFVAAMNGAQVAIVVPTTLLSRQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKKE
VAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLEDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWS
PQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHLL
KIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLFL
TRDLPTPEKRLQGAAVIMTQLAEFAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgccggcaggtcttgaaacgctgctgctcgccgagctcgcccgaacgggagagccg
gtcgcctatgtcatgtccgacggccaccgcatggccgatctcgaacagatgctgggcttc
gtcgcccccgacattccggttctcaccttgccggcctgggactgtctgccctatgaccgc
gtctcgccgagcgccgacacctcggctcgccggctggccgcactcggcggcctcatcgcc
catcgcaagaagccgcatgcggcaatcgtactcgtcacggccaatgccatgctgcagaag
gtggcgccgcaggatgtcatcgaaagcctgagcttttcggctcgtccgggcaaccagctg
cgcatggacgatctcgccggtcgcctggagcgcaacggcttcgagcgggttgccaccgtt
cgcgaggtcggcgaatatgccgtgcgcggcggcattctcgatgtcttcgtgccgggttcc
gaagagccggtccgcctggatttcttcggcgacacgctggagagcatccgcagcttcgat
ccggccagccagcgcacgatcggacaggtgcgctccctcgatctcaacccgatgagcgaa
gtgacgctgaccccggatacgatcagccgcttccgcaagaattacctctccgctttcggc
gcgaccacccgcgacgacgcgctctatctcgccgtctccgaaggtcgccgttatcccggc
atggagcactggctgccgcttttctacgaaaagctcgataccgtcttcgattatctcagc
ggcttccggatcgtcatcgaccatacggtgcgtgaagcagccgaagagcgctccaagctc
gttctcgactattacgacgcccgcctgaactccggccagccggccaaggggatgacgcag
ggcacgccttacaagccggtgacgccgggccagctctatctcgacagcaagcttttcgca
aaaaccctcgacgcgctcggcgcgatccgcatcagccccttcaacgagcatgagggcgag
gcgcggcgggtcgtcaatgtcgacgcccgccagggccagcgctgggcgcgtgcgaatgcc
gaaggcggcggcgatgcagaacgcatcaacatcttcgacgtcgtcgtcaagcatatcgcc
gaccgccgcgccgctggcgccaaagtgctcgtcaccgcctggaccgagggttcgctggag
cggctgctgcaggtgctgaacgaacacggcctggaaaaggtcaagccgatcgaggcgctg
aaagatgtcggctcgctggcgagaggcgaggcggccgctgccgtgctcagtctcgaagcc
ggcttcgaggccggcgatctcgtcgtcatcggcgagcaggatatcctcggcgaccgtatg
gtgcgccgctccaagcgccgcaagcgcgccgccgatttcatctcggaggtggcaggcctc
gacgagggctcgatcgtcgtccacgccgaacacggcatcggccgctttatcgggctgagg
accatcgaggccgcaggcgcgccgcatgcctgcctcgaactgcaatatgccgacgaggcc
aagctcttcctgccggtcgaaaacatcgatcttctctcgcgttacggcggcgagggcacc
gaagcccagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctcaag
aagcgcctgctcgacatggccgatgcgctgatccgcattgccgccgagcgcctgacgcgc
catgcgccgatgctgacgacgcctgaaggcctctacgacgaattcgccgcccgcttcccc
tatgacgagaccgaggatcaggaaaacgccatcgaagcggtgcgttccgatctcggtgcc
ggccggccgatggatcgcctcgtctgcggcgacgtcggcttcggcaagaccgaagtggcg
ctgcgcgccgccttcgtcgcagcgatgaacggcgcccaggtcgcgatcgtcgtgccgacg
acactgctttcccgccagcatttcaagaccttctccgatcgtttccgtggtctgccggtg
cgcatccagcaggcctcgcgcctcgtcggcgcgaaggaactggcgctgaccaagaaggaa
gtggcggaaggcaagacggatatcgtcgtcggcacccatgcgctgctcggcgccggcatc
aaattcgccaatctcggtctgctggtcatcgacgaggaacagcatttcggcgtcaagcac
aaggagcggctgaaggagctgaagagcgacgtgcacgtgctgacgctgtcggcaacgcca
atcccgcgcacgctgcagcttgccatgaccggcgtgcgcgaactgtcgctgatcaccacg
ccgccggtcgaccgcatggcagtgcgcaccttcatctcgcccttcgacagtctggtcatc
cgcgagacgctgatgcgtgagcattatcgcggcggccagagcttctatgtctgccccagg
cttgccgatctcgaggacgtgcatgccttcctgcagtcggatgtgccggaactgaaggtc
gccgtcgcccatggccagatgccggccggcgaactcgaagacatcatgaatgccttctat
gaaggccgctacgacgtgcttctctcgaccaccatcgtcgaatccggcctcgacgtgccc
acagccaacacgctgatcgtccaccgcgccgacatgttcggccttgcccagctctatcag
ctgcgcggccgcgtcggccgttcgaaggtgcgcgccttcgcgctcttcaccctgcctgtt
aataaggtgctgacggcaaccgcagagcgtcgcctcaaggtgttgcagtcgctggatacg
ctcggcgccggtttccagctggcgagccacgatctcgatatccgcggcgccggcaacctg
ctcggcgaggagcagtccggccatatcaaggaggtcggcttcgagctctaccagcagatg
ctggaagaggcggtcgccgaggtcaagggtgtcgacgagatccacgacaccggctggtcg
ccgcagatctcggtcggcacgacggtgatgatcccggaaggctacgtgcccgatttgcac
ctgcgcatggcgctctaccgccgccttggcgaaattaccgagctcaaggagatcgatggc
ttcggcgccgagatgatcgaccgcttcgggccgatgccgatcgaagtccagcatctgctg
aagatcgtctacatcaagtcgctctgccgcaccgccaatgtcgaaaagctcgatgccggc
ccgaagggtgtcgtcgtgcagttccgcaacaaggaattccccaatccggccaacctcgtc
ggttatatcggcaagcagggcacgatggcgaagatccgccccgatcacagcctgttcctg
acccgcgacctgccgacgccggaaaaacgcctgcagggcgctgccgtcatcatgacgcag
ctggccgaattcgcgaaatag
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