Rhizobium johnstonii: RL2477
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Entry
RL2477 CDS
T00402
Symbol
dacF
Name
(GenBank) putative penicillin-binding protein
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
rle
Rhizobium johnstonii
Pathway
rle00550
Peptidoglycan biosynthesis
rle01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RL2477 (dacF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rle01002
]
RL2477 (dacF)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rle01011
]
RL2477 (dacF)
Enzymes [BR:
rle01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RL2477 (dacF)
Peptidases and inhibitors [BR:
rle01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
RL2477 (dacF)
Peptidoglycan biosynthesis and degradation proteins [BR:
rle01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RL2477 (dacF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
CAK07966
UniProt:
Q1MGF7
LinkDB
All DBs
Position
complement(2612494..2613687)
Genome browser
AA seq
397 aa
AA seq
DB search
MLKPALRLLACLMPFATGAFAADGGAAGFATKVAQAYMIEATTGTVLLAKNEDQGFSPAS
LAKLMTMDLVFEALTKGQITLDTEYPVSEYAWRTGGAPSRAATMFASLKSRVRVEDLIKG
VAIQGANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFGNSTGLPDGKSKVTAREM
VTLAAALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDIGADGLATGFTEGEGYSIVA
SVERDGRRLFVALAGIASDKERTEEAKRVLEWGLTAFENRQIFGEKEVIGAASVYGGTAR
TVDLVAKAPVSVYIPISNPDRLSARIIYRWPLAAPVKPDTQAGTLRIFAGSRLLREVPLY
TVQAVGEGSLSSRAVDAMLELGESLFFSWLWDKPAPV
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagcccgcgcttcgcctgcttgcatgcctgatgccgttcgccaccggagccttt
gcagccgatggcggtgccgccggtttcgccaccaaggtggcgcaggcctatatgatcgag
gctaccaccggcacggtgcttctcgccaagaacgaggatcaaggcttttcgccggcctcg
ctcgccaagctgatgacgatggacctcgttttcgaggcgctgaccaagggccagatcacg
ctcgacaccgaatatcccgtttccgaatatgcttggcggacgggcggcgcgccgtcgcgg
gcggcaacgatgtttgccagcctgaaatcgcgcgtgcgcgtcgaggacctgatcaagggt
gtcgccatccagggcgccaatgacagctgcatcatcctcgccgagggcatggccggaagc
gagcagcaatttgccgtgtcaatgacgcggcgagcccgcgaactcggcatggagaaggcg
gagttcggcaattccaccggccttcccgatggcaagagcaaggtgacggcacgcgagatg
gtgacgctcgccgccgcccttcagcagacctatccgaacctttatccctatttcgcgcag
ccggatttcgagtggaacaagatcttccagcgcaaccgcaacccgttactcgggctcgat
atcggcgccgacgggctggcgactggctttaccgagggcgagggctattcgatcgtcgct
tcggttgagcgcgacggcaggcggctgtttgtggcgcttgcaggcatcgcctccgacaag
gagcggaccgaggaagccaagcgcgtactcgaatgggggctgacggccttcgagaaccgg
cagatcttcggcgagaaggaagtaattggtgctgccagcgtctacggcggcacggcccgc
accgtcgatctcgtcgccaaggcgccggtcagcgtctatattccgatcagcaatcctgac
cgattgtcggcgcgcatcatctatcgctggccgctggcagcgccggtcaagccggatacc
caggcaggcacgctgaggattttcgccggcagccggctgctcagggaagtgccgctttat
acggtgcaggcggtcggcgagggctcgctcagcagccgggcggtcgacgccatgctggaa
ctcggcgaatcgctgttcttctcctggctctgggacaagcccgcgcccgtctga
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integrated database retrieval system
