Rhizobium johnstonii: RL3309
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Entry
RL3309 CDS
T00402
Symbol
murD
Name
(GenBank) putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
rle
Rhizobium johnstonii
Pathway
rle00470
D-Amino acid metabolism
rle00550
Peptidoglycan biosynthesis
rle01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RL3309 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RL3309 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rle01011
]
RL3309 (murD)
Enzymes [BR:
rle01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RL3309 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rle01011
]
Precursor biosynthesis
Amino acid ligase
RL3309 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
2-Hacid_dh_C
MurD-like_N
NAD_binding_2
KARI_N
TrkA_N
F420_oxidored
NAD_Gly3P_dh_N
CbiA
Motif
Other DBs
NCBI-ProteinID:
CAK08796
UniProt:
Q1ME31
LinkDB
All DBs
Position
complement(3469523..3470935)
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AA seq
470 aa
AA seq
DB search
MISVTTLKDRKVALFGLGGSGFATARALVTGGAEVTAWDDNPDSVAKAAAEGIRTEDLRN
IDWSQQALFVLSPGVPLTHPKPHWTVDLARAAGVDIVGDVELFVRERRAHAPDCPFIAIT
GTNGKSTTTALIAHILKSAGYDTQLGGNIGTAVLTLDPPKAERYYVVECSSYQIDLAPTL
NPSAGILLNLTPDHLDRHGTMQHYADIKERLVAGSDVAIVGVDDSHSALIADRVERAGVK
VVRISRRNVVADGIYAEGTKLIQAAGGAMLPFADLDGIQTLRGSHNAQNAAAAVAACLAV
GVSADAIRAGLASFPGLKHRMQPVGQRGRVVFVNDSKATNADAAAPALSSYDRIYWIAGG
LPKAGGITTLAPYFPRIAKAYLIGEAAAEFAATLGEAVPYEISGTLERAVAHAAADAERD
ESAASAVMLSPACASFDQYKNFEVRGEAFVGHVAALDGITMLIGPATGEK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgatctcggtcacgacgctcaaggacaggaaggtcgcgctcttcgggctcggcggctcc
ggctttgccaccgcccgggcgctggtaacaggcggtgccgaggtgaccgcctgggacgac
aatcccgacagtgtcgccaaggccgctgccgaaggcatcaggacggaagacctgcgcaac
atcgactggagccagcaggcgctgttcgtgctgtcgcccggcgtgccgctcacccatccg
aagccgcactggaccgtcgatcttgcccgcgcggccggcgtcgatatcgttggcgacgtc
gaactcttcgtgcgcgagcgccgcgcccatgcgccggattgccctttcatcgccataacc
ggcaccaacggcaagtcgaccacgacggcgctgatcgcccatatcctgaaatccgccggc
tacgatacgcagctcgggggcaatatcggcacggccgtgctgacgctcgatccgccgaaa
gccgagcgctactacgtcgtcgaatgctcctcctaccagatcgatctggcgccgacactg
aacccgtctgccggtatcctgctcaacctgacgcccgatcatctcgaccgtcacggcacc
atgcagcattatgccgatatcaaggaaaggctggtcgccggcagcgatgtcgcgatcgtc
ggcgtcgacgatagccattcggcgctgatcgccgaccgcgtcgagcgggcaggcgtcaag
gtggtccgtatttcgcgccgcaacgtggtggccgacggcatctatgccgagggcacgaaa
cttatccaggccgccggcggcgccatgctgcccttcgctgaccttgacggcatccagacg
ctgcgcggcagccataatgcgcaaaacgccgccgcagccgttgccgcctgcctcgcggtc
ggggtttccgccgacgccatccgcgccggccttgcctcgtttcccggcctcaagcaccgc
atgcagccggtcgggcagcgtggccgcgtcgttttcgtcaacgattccaaggcgaccaac
gccgacgccgcagcaccggctctttcgagctatgatcgcatctattggatcgccggaggc
ttgccaaaggctggcgggatcacgactcttgctccctattttccgcgcatcgccaaggcc
tatctgatcggcgaggcggcggcggaattcgccgcgacgctcggcgaggccgtgccttac
gagatctcgggcacgttggagcgcgccgtcgcgcatgcggccgccgatgcggaacgcgac
gaaagcgctgcttcggccgtgatgttatccccggcttgcgcaagcttcgaccagtataag
aacttcgaagtcaggggcgaagccttcgtcggccacgtggcggcgcttgacgggattacg
atgctgatcggtccggcaacaggagagaaatga
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