Rhizobium johnstonii: RL3402
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Entry
RL3402 CDS
T00402
Symbol
rpoD
Name
(GenBank) putative RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rle
Rhizobium johnstonii
Pathway
rle02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RL3402 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rle03021
]
RL3402 (rpoD)
Transcription machinery [BR:
rle03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RL3402 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF4350_C
DUF4351
DUF3106
Motif
Other DBs
NCBI-ProteinID:
CAK08890
UniProt:
Q1MDT7
LinkDB
All DBs
Position
complement(3568480..3570537)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGSSDDDDAGGDEESEGGELAPSSGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKLAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSTAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFARGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaagccgccaagaag
cgcggctatgtgaccatggacgagcttaacgcggtcctgccgtccgaagaagtgacgtcc
gagcagatcgaagacacgatgtcgatgctgtccgacatgggcatcaacgtcatcgaggac
gaggaagccgaggaagccggcgcttccggcagcagcgatgacgacgacgccggcggcgac
gaggagagcgaaggcggcgaactggcgccttcgagcggcacggcgctggcgactgccaag
aaaaaagaaccgaccgaccgtaccgacgatccggttcgcatgtacctgcgcgagatgggc
tcggtggagctgctttcccgcgagggcgaaatcgcgatcgccaagcgtatcgaggccggc
cgcgagacgatgatcgcgggtctctgcgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgagctcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacg
acctattccggccctgaagccaaggctgcgccgcagttccagagcccggagaagatcgaa
gccgatcgcaagctggcagaagagaaggaaaagacccgtcgcgcccgctccggcgacgac
gacatcaccgatgtcggcggcgaaggcctgcctcccgaggaggaggaagaggacgaggac
gaatccaatctttcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctcgatacgatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcggctgtcggcttccggcacgctgtccaccgcccaggagcgccgctacaaggaactc
aaagatgagctcatcaaggccgtcaaatctctgtccttgaaccagaaccgcatcgacgcc
ctcgtcgagcagctctacgacatcaacaagcgcctcgtttccaacgagggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgactccttcctggagcaataccagggcgct
gagctcgatccgaactggatgaagtcgatcggcaatctggccgcccgcggatggaaggaa
ttcgccaggggcgaaaacacgacgatccgcgacattcgccaggaaatccagaatctggcg
accgaaaccggtatctcgatctcggaattccgccgcatcgtccatatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctggtcatc
tccatcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggctacaagttctcg
acctatgcgacatggtggatccgtcaggcgatcacccgttcgatcgccgaccaggcccgc
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacatcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagagctggccgaaaagctggcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
acccctgtgggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctaccgatcgacgccgccatccaggcgaacctgcgcgagacgacgacccgcgttctc
gcctcgctgacgccgcgcgaggaacgtgttctgcgcatgcgcttcggcattggcatgaac
accgaccacacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgtattcgc
cagatcgaggcgaaggcgctgcgcaagctgaagcatccgagccgctccagaaagctgaga
agcttcctcgacagctaa
DBGET
integrated database retrieval system
