Rhizobium johnstonii: RL3420
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Entry
RL3420 CDS
T00402
Name
(GenBank) putative helicase/glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rle
Rhizobium johnstonii
Pathway
rle03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RL3420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rle03400
]
RL3420
Enzymes [BR:
rle01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RL3420
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RL3420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF2026
Motif
Other DBs
NCBI-ProteinID:
CAK08908
UniProt:
Q1MDR9
LinkDB
All DBs
Position
complement(3593271..3594725)
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AA seq
484 aa
AA seq
DB search
MRRVVLAGRGELAEWRDAARAFAVAGILPEEIEWREKRAEPGFAFQHDAMPPPSAAACKP
MTVPPAFIELAETVLCHSDPARFSLLYRLLWRLQLDRQLLEVASDEDVARARLMAKNVRR
DAHKMTAFVRFKEVGAVSAGRRKFLAWFEPDHHIVRRTAPFFQRRFTDMDWLIATPRGSA
AWDGERLTMSDAPCEKPNLTDAADELWRTYYASIFNPARLKLKAMQAEMPKKYWKNLPEA
DLIPGLIASAESKVRAMAAREATQSLPFHDRLQEAARGIPAEPEAPAGTLEALRAEAAGC
TRCPLHAKATQTVFGEGPLDAEVMLVGEQPGDQEDIAGRPFVGPAGRLLDQVITEAGIDR
SMLYVTNAVKHFKYEPRGKRRIHQKPNMGEVKHCRWWLNLEMALIKPKLVVAMGATALAA
LTDTKQRLQDVRGKAIAIDERRTLFVTVHPSYLLRIPDERLKADELARFREDMLTIQRLM
LAAA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggtcgtgctggcaggacgcggggagcttgccgaatggcgtgacgccgcgcgc
gccttcgcggtcgccggcatcctgccggaagagatcgagtggcgcgaaaaacgcgctgag
ccgggttttgcatttcaacacgacgccatgccgcctccgtctgccgcagcatgcaagccg
atgacagtgcctcccgccttcatcgagctggcggagacagttctctgccattccgacccg
gcgcgcttttccctgctttaccgtctgctctggcggctgcagctggaccggcagctgctt
gaagtggcctccgacgaggacgtcgcccgtgccaggctgatggcgaaaaacgttcggcgc
gacgcgcacaagatgacggccttcgtccgcttcaaggaggttggtgcggtgtcggcgggc
cgtcgaaaattcctcgcctggttcgagccggatcaccatatcgtcaggcgcacagcgcct
ttcttccaacggcgcttcaccgacatggactggttgatcgccacacccaggggatcggcc
gcctgggacggagagcggctgacgatgagcgacgcgccgtgcgaaaaacccaatctcacc
gatgctgccgatgaactttggcgcacctactacgccagcattttcaatccggcgcggttg
aagctgaaggcgatgcaggcggagatgccgaaaaaatactggaagaacctgccggaagcc
gatctcatccctgggctgatcgcatcggcggagagcaaggtgcgggccatggctgcaaga
gaggcgacccagtcgttgccttttcacgatcgcctgcaggaagccgcgcgtggcattcca
gccgagcctgaagcgccggcgggcacgctggaagcactgcgcgcggaagctgccggctgc
acccgctgtccgcttcatgcgaaggcgacgcaaaccgtattcggggaggggccgctcgat
gcagaagtgatgttagtcggcgagcagccaggcgaccaggaggatattgccgggcgccct
ttcgtcggtcccgccggcaggctgctggaccaggtgatcacagaagcgggcatcgaccgc
tcaatgctttacgtcaccaatgccgtcaagcatttcaaatatgagccgcgcggcaagcgt
cgcatccatcagaagcccaatatgggcgaggtgaagcattgccgctggtggctcaatctg
gagatggcgctgatcaagccgaagctggtcgttgcgatgggggcgacggcgctcgcggcg
ctgaccgatacgaaacaacggctgcaggatgtcagggggaaagcgatcgcgatcgacgag
aggcgcacgctcttcgtgacggtgcatccatcctatctgctgcgtattcccgatgaacgg
ctgaaagcggatgaactggcacgatttcgcgaagatatgctgacaattcagcgccttatg
ctggcggctgcataa
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