KEGG   Rhizobium johnstonii: RL4740
Entry
RL4740            CDS       T00402                                 
Symbol
rho
Name
(GenBank) putative transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
rle  Rhizobium johnstonii
Pathway
rle03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rle00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RL4740 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rle03021]
    RL4740 (rho)
   03019 Messenger RNA biogenesis [BR:rle03019]
    RL4740 (rho)
Transcription machinery [BR:rle03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RL4740 (rho)
Messenger RNA biogenesis [BR:rle03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RL4740 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA
Other DBs
NCBI-ProteinID: CAK10223
UniProt: Q1MA17
LinkDB
Position
complement(5054181..5055446)
AA seq 421 aa
MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagtaaatccccgacggatctgctggcattt
gccgaatcgctcgaggtcgagaatgcaagcacgatgcgcaagcaggagctgatgtttgcg
atcctcaagatgcttgccagccaggatgtcgaaatcatcggcgaaggcgtcgtcgaagtg
ctgcaggacggtttcggcttcctgcgttctgccaatgcgaactacctgccaggcccggac
gatatttacatctccccatcgcagatccgccgtttctcgctgaaaaccggcgatacggtc
gagggccccatccgtgggccgaaggaaggcgagcgctatttcgcgctgctcaaggtcaac
accatcaatttcgacgatccggaaaagatccgtcacaaggttcatttcgacaatctgacg
ccgctctatccgaacgagcgcttcaagatggaactcgatattcctaccaccaaggatctg
tcgccgcgtgtgatcgacctggtggcgccgctcggcaagggccagcgtggattgatcgtc
gcaccaccgcgcaccggtaaaaccgtgttgctgcagaacatcgcgcattcgatcaccgcc
aatcatcccgagtgctatctgatcgtcctgctgatcgatgaacgccccgaagaagtgacc
gacatgcagcgctcggttcgcggcgaggttatctcctcgaccttcgacgaaccggccgtg
cgtcacgtgcaggtcgccgagatggtcatcgagaaggccaagcgccttgtcgaacacggt
cgcgacgttgtcatcctgctcgattcaatcacgcgcctgggccgtgcctataacacggtc
gttccctcgtcaggcaaggtcctgacgggtggtgtggacgccaacgctctgcagcggccg
aagcgcttcttcggcgcggcgcgtaacatcgaggaaggcggctccttgacgatcatcgca
acggcgttgatcgataccggcagccgcatggacgaagtcatcttcgaagaattcaagggt
accggcaactccgaaatcgtcctcgaccgcaaggtcgccgacaagcgtatcttcccggcg
atggacatcctgaagtcgggcacgcgcaaggaagatcttctcgttccacgccaggatctg
cagaagatcttcgtgctccgtcgcatcctggctccaatgggcacgaccgatgcgatcgaa
ttccttatcgacaagctcaagcagacgaagaacaattccgacttcttcgattcgatgaac
acataa

DBGET integrated database retrieval system