Rhizobium johnstonii: pRL100172
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Entry
pRL100172 CDS
T00402
Symbol
rhiR
Name
(GenBank) Putative transcriptional regulatory protein
KO
K18098
LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
Organism
rle
Rhizobium johnstonii
Pathway
rle02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
pRL100172 (rhiR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rle03000
]
pRL100172 (rhiR)
Transcription factors [BR:
rle03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
pRL100172 (rhiR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
HTH_38
HTH_23
DUF1128
HTH_28
HTH_11
Motif
Other DBs
NCBI-ProteinID:
CAK10396
UniProt:
Q1M7Y1
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All DBs
Position
pRL10:complement(172026..172769)
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AA seq
247 aa
AA seq
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MKEESSAVSNLVFDFLSESASAKSKDDVLLLFGKISQYFGFSYFAISGIPSPIERIDSYF
VLGNWSVGWFDRYRENNYVHADPIVHLSKTCDHAFVWSEALRDQKLDRQSRRVMDEAREF
KLIDGFSVPLHTAAGFQSIVSFGAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKI
QALPMITTREREIIHWCAAGKTAIEIATILGRSHRTIQNVILNIQRKLNVVNTPQMIAES
FRLRIIR
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggaagaatcctcagcggtctcgaatctggtgttcgatttcctgtcagagtcagcc
agcgcaaagagcaaagacgatgtgttactcttatttggaaaaatttcgcagtatttcggg
tttagttatttcgcgatatccggcatcccctcgcctattgagcgaattgattcctatttc
gttttgggcaattggtcagtcgggtggtttgatcgttatcgtgaaaacaattatgtccac
gccgaccccatagtgcatcttagcaagacatgcgatcacgcatttgtttggtcggaagct
ctgcgagatcaaaaactcgatcggcagagccgtcgtgtcatggatgaggcacgcgaattc
aagttgattgacggcttcagcgttcctttacacactgccgctgggtttcaatcgattgtc
agttttggagcggaaaaggtagagctctcaacctgcgaccgaagcgcgctctatctgatg
gcggcttacgcgcacagcttgctccgcgcccaaattgggaatgatgccagtcgaaaaatt
caggccttacccatgatcacaacgcgagagcgcgaaatcatccattggtgtgccgcaggc
aaaacagcaatagagatcgcaacgattctcggacgatcccatcgaaccattcaaaatgtc
attttgaacatccagcgaaagctcaatgtggttaatacacctcagatgattgccgaaagc
tttcgtctcagaatcattcgctga
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