Rhizobium johnstonii: pRL110533
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Entry
pRL110533 CDS
T00402
Name
(GenBank) putative exonuclease/polymerase
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rle
Rhizobium johnstonii
Pathway
rle03030
DNA replication
rle03430
Mismatch repair
rle03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
pRL110533
03430 Mismatch repair
pRL110533
03440 Homologous recombination
pRL110533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rle03032
]
pRL110533
03400 DNA repair and recombination proteins [BR:
rle03400
]
pRL110533
Enzymes [BR:
rle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
pRL110533
DNA replication proteins [BR:
rle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
pRL110533
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
pRL110533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DUF5710
Motif
Other DBs
NCBI-ProteinID:
CAK03486
UniProt:
Q1M5K3
LinkDB
All DBs
Position
pRL11:complement(575139..576119)
Genome browser
AA seq
326 aa
AA seq
DB search
MSVHRDSQLDMFAKASPATAKARGPSHRRPSQPVVHSDEDMARALEESGNYRILRKLAAR
PIASVRQPGFSRLGVILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQP
SRPIPPEITRLTGITDAMVEGQLIDIQSLRTLIEPADLIIAHNAGFDRPFCEAFSKIFTG
KAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDREQRDGESPF
TELYRASQRSRIRIFAEHSPFEMKDQLKARGYRWSDGSDGRLKSWWIEVGEEDLGDELSY
LRSDIYRWAEAEPPIVRLTAFDRFKL
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcacagagattcgcaactcgacatgtttgccaaggcatcgcccgcgacggcc
aaggcacgcggtccatcgcaccggcggccatcgcagccggtcgtccactccgatgaagac
atggcgcgggcgctcgaagagagcggcaactatcgcatcttgagaaaactggccgcccgg
ccgattgcgtcagtcagacaaccggggttttcgcggctcggcgtcatcctcgatacggag
accaccggtctcaaccaccgcaacgacgagatcatcgaaatcggcgccgtcgcctttacc
ttcgacgatgacggcgcgatcggcgatatcgtcggcatttacggcggcctgcaacaaccg
tcccggccgatcccgcccgagatcacccggctgacgggtatcaccgatgcgatggtcgaa
gggcagctcatcgatatccaatcgctgagaactctgatcgagccagcggatctgatcatt
gcccacaatgccggtttcgaccggccgttctgcgaggccttctcgaagattttcaccggc
aaggcctgggcatgctcggtttcggagatcgattggagcgcccgcggcttcgagggcacg
aagctcggttatctcgtcggccaagccggttattttcacgaaggccatcgcgccgtggac
gactgccacgcactgctggaaatcctcgatcgagagcagcgcgacggtgaaagcccgttc
accgagctttaccgcgccagccagcgttcacgcatccgtatctttgccgaacacagcccg
ttcgagatgaaggatcaactgaaggcaaggggttatcgctggtcggacggaagcgacggc
cgcctgaagtcctggtggatcgaagtcggtgaagaggatctcggcgacgagctttcctat
ctgcgctcggatatttaccgctgggccgaggcggagccgccgatcgtgcggctgacggcc
ttcgatcgtttcaaactctga
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