Rhizobium johnstonii: pRL120317
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Entry
pRL120317 CDS
T00402
Symbol
vbsD
Name
(GenBank) putative efflux transporter involved in vicibactin siderophore export
KO
K26937
MATE family, multidrug efflux pump
Organism
rle
Rhizobium johnstonii
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rle02000
]
pRL120317 (vbsD)
Transporters [BR:
rle02000
]
Solute carrier family (SLC)
SLC47: Multidrug and Toxin Extrusion (MATE) family
pRL120317 (vbsD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MatE
Motif
Other DBs
NCBI-ProteinID:
CAK12029
UniProt:
Q1M4E3
LinkDB
All DBs
Position
pRL12:339572..340993
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AA seq
473 aa
AA seq
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MNDMSDTSGSFRKRQRLAPEDLASPELLRLLLRLGLPAMFGLSINAAHHTINMIFVGMIG
DDQIAAIMIVLPVLMLVAAFGEGIGVGVATEVGRTLGAGNRSRAGAIASISLAAGVVFGA
ASAIAILAFPDLLLFGATPALQPLAQHYLMIIAVSVPLTMAQIILDFLAIAEGNARFSMW
TLVACFALNMILDPIMIFGFGLGLQGVAIATILSQLVALCIYAAYHARRLGTVRLTFGWR
WRDIGYLRPVLAVGAPTTLTSLATAGAIAAVVSLAGTYHGEAGIAGVGIALRLLAVGTLP
VIGISLGAQSILSFAWGRGDTTRMLSAARILTVVTSAVSGAYGLGALVFSEELASFFTDD
ATVIGIAGQAIIATHLPLLLFGLRQTVLILFQAQGRPKAAVAIGLAQNGYLLFPLLALLP
PFFGFSGLLAAMFLASALTGLLSAGCLARTLSALRQRAADHLTSIRPYPNFCP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatatgagcgacacaagcggcagcttccggaaacggcagcgcctcgcaccggag
gaccttgccagtcctgagctcctcaggctgctgcttcggctcggactgccggccatgttc
ggcctgtcgatcaacgccgcccatcacacgatcaacatgattttcgtcgggatgatcggt
gacgaccaaatcgcggcgatcatgatcgtcctgccggtcctcatgctcgtcgccgccttc
ggcgaagggatcggcgtcggtgtcgcaacagaggtcggacgcacgctcggcgccggcaac
cgatcccgggccggcgccattgcctcgatcagccttgctgccggcgtcgtcttcggcgcg
gcaagcgccatcgcaatcctcgcatttccggatttgctgctgtttggcgccacgcctgcc
cttcagccgctcgcgcaacattacctgatgatcattgcggtctcggtgccgctgacgatg
gcgcagatcattctcgatttcctggcaatagcagagggcaatgcccgtttcagcatgtgg
acgctggtcgcctgctttgcgctgaacatgatcctcgacccgatcatgatcttcggcttc
ggcctcggcctgcagggcgttgcaatcgcaaccatcctgtcccagctcgtcgcgctttgc
atctatgctgcttaccacgccaggcgacttgggaccgtccggctgacctttggctggcgg
tggagagatatcggctatctcaggcctgtgcttgctgtgggcgcaccgacgacactgacc
agtctcgcaaccgcaggcgcgattgcggccgtggtatcgctcgccggcacctatcacgga
gaagccggcattgccggcgtcgggatcgccttgcggctgctggcggtcggaaccctcccc
gtcatcggcatttcactcggagcccagtcgatcctgagctttgcctggggtcgaggcgat
acgacccggatgctgtcggcagcccgcatcctcacagtggtcaccagtgcggtgagtggc
gcatacgggttgggggcgctcgttttctccgaagagcttgcctcgttcttcaccgacgat
gccacggtgatcgggatcgccgggcaagcgatcattgcgacccatcttccccttttgctg
ttcggcctgcggcaaacggtgctgatcctcttccaggcccagggcagaccgaaagcggcg
gttgccatcggcctggcgcagaatggctatcttctttttccgctgcttgctcttctgccg
ccgttcttcggtttttcaggcttgctggcagcaatgttcctggcctctgccttgaccggc
ctgctgtcagccggctgcctggcgaggacgctcagcgcgctccgtcagcgcgctgccgac
catctgacctccatccgtccatatcccaacttttgtccatga
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