Rhizobium johnstonii: pRL90161
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Entry
pRL90161 CDS
T00402
Name
(GenBank) conserved hypothetical protein
Organism
rle
Rhizobium johnstonii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4082
DMFA2_C
Cadherin_5
Big_9
Cadherin_4
CshA_repeat
Cadherin_3
Big_7
Mo-co_dimer
Motif
Other DBs
NCBI-ProteinID:
CAK03878
RhizoBase:
pRL90161
UniProt:
Q1M8Z8
LinkDB
All DBs
Position
pRL9:172982..178306
Genome browser
AA seq
1774 aa
AA seq
DB search
MKPSNGGRRETGTPLLLRFHVRNRDYLSTAGGTPSVCHPPSVWTALLGTATVVSSSTQGP
YGFANQGSATVQSSFSGTVTSSMISSGDMQSSPASSTAMPAPAGDSGAQDSFTKTASTAT
VFQTPSSTLQRTVLAPDPSEEAATLPAAPTLTGIASDADTGSAKTAAPVSSSSSLDTASL
RLQASIASISVEPSQDVSAETTAAPTALAAPMEAVSAAATPNKIALENLKQGNPISEWGL
EGDGGGTIQGFATEISTNIGQTVDFKIATDSTHYRIDIYRIGYYGGAGARKVDSIEQSLT
SAQIQPHPIVDMSLGLIDCGNWSVSASWQIPDDAVSGVYFAKLVREDGTEDASIIPFVVR
DDASTSDIVFQTSDTTWQAYNAWGGASLYYGEVPVDPADMIGYLPPNCSCGLTAIGRASA
VSYNRPIITNTSPIGGSHDFIFGVESSAIQWLEQNGYDVSYISGVDATRSGSLLLNHDAY
LSVGHDEYWSAEQRANVEAARDAGVNLAFWSGNECYWKVRWESSIDGSGQAYRTMVCYKE
TWGTSTDPSATGTGTWRDPRYADPGQEPENSLTGTMFQVDSYRSDTITIPYDYSNLRFWR
NTDVAELQEGETYNLVQNLLGYEWDSDVENGFRPDGLINLSLSSIAVSTYLRDYGTTVGD
AVATHSLTMYRAESGALVFGAGTVFWSWGLNANHQGAATPTDPNVQQAMVNMFADMGIQP
TTLDASLILATQSTDALKPTSSISSPIIGASFVEGQRVTITGTAQDFGGGIIAGVEVSTD
GGQHWFKATGRESWSYNWVVQASGTYTILSRAVDDSVNLEAPSAGKQVTVTLPGTQGLWT
LAEKPAVETAIDRDPVELGLRFQATTAGSVQGIRFYKGFYNTGDHVVSLWSGDGTLLATG
VSVGESLSGWQTVMFSSPIQIAAGTTYVASYHSNGFFSVTENYFSEPYASGALKAVDGGG
VFAYSGTSTFPGQSPGGSNYWVDVVFDAGPNSQPVATDDSGLTIGHNGSLVISIAALVAN
DVDANGDALTITAVGSALNGTVALNTQTGTITFTPANNYSGPASFTYTLSDGRGGTDQGN
VSLTVQAGPAGETLFTGSEGPTGSGFNDNTAMELGMKFVASSNGTISGIRYYKAAGDTSV
HTGSIWRADGTLVATVTFTNESLSGWQTATFSTPLQITAGATYVASYHTTGSYVATAGYF
NTAHTNGSLTALAGANGVYAVGSGSTFPTQSYQSSNYWVDVVFNQSTGNTVPVAANDNGY
TTYSNTALSIAAANLLANDSDGDGDPLSITGANGAVNGTVTFNSQTNTVIFTPNSGYTGV
ASFSYSISDGHGGTASATVSLTVNSQPGGGTTSSLFTSADTSGVAAANDANSVELGVKFI
ASANGQITGLTYYRSAQDTGTHVGSLWTTSGQLLGQATFINETASGWQTVSFTQPINVTA
GVTYVASYHSNGFYSATANYFTTDYTSGALTAPASSVSGGNGVYAYGTGSLFPTASYNAS
NYWVDVLYQQGAQNAVPVAANDSGYSTNTGTPITLQASALLANDSDADGDPLTITGVSGA
VNGSVAYSAQAQTVTFTPTAGYSGPASFSYAISDGKGGTATAQVALTINNPAAGPEQNLF
AANATPAIVSTNDNQQVNLGMKFQADTAGWITGIRFYKGADNTGPHNGYLWTASGTLLGS
VAFSNETASGWQTATLTQQVEIAADTTYVVSYSTNGNYSATGNYFSADVTNGDLRALSGS
NGVYAYGSSGLFPSASYNSTNYYVDVAFRPQLAA
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttccaatggtggtcgacgggaaacggggacgccgctcttgctgagatttcat
gtgaggaatcgcgattatctaagtactgccggcggcacgccgagcgtctgtcacccaccc
tccgtctggaccgcactgctcggaactgcgaccgtggtgtcttcaagcactcaggggccc
tacggctttgccaatcagggcagcgcaaccgtccaatcctccttctccggcacggtcaca
tcttccatgatatcatcaggcgacatgcaatcgtcccccgcatcatcgacggcgatgccg
gcgcctgcgggagatagcggcgcgcaagacagtttcaccaagacggcgtctactgcgacg
gtattccagacgccgtcctcgacattgcaacgcaccgtgcttgccccggatccgtccgag
gaggctgcgacactgcctgccgctcccacgctgacgggtattgccagcgacgccgatact
ggcagcgccaagacggcggcgccggtcagttcttccagcagcctcgacacggcttcgttg
cgccttcaggcgtcgatagcatccatctcggtggagccgagccaggacgtttctgctgag
acgaccgcggccccgacagcactggcggcaccgatggaggcggtttcggctgcggcgaca
cccaacaagatcgcgctcgaaaacctgaagcagggcaacccgatcagcgagtggggtctg
gagggcgatggcggtggcaccatccagggcttcgccaccgaaatcagcacgaatatcggc
cagacggtcgacttcaagatcgccaccgattccacccactaccgcatcgacatttaccgc
attggctattacggcggggccggcgcgcgcaaggtcgactcgatcgagcaatcgctgaca
tcggcgcagatccagccgcacccgatcgtcgacatgtcgctcggcctcatcgattgcggc
aactggtcggtctcggcgagctggcagattcccgacgatgccgtctcgggcgtctatttc
gccaagctggtgcgcgaggatggcaccgaggatgcaagcatcatccccttcgtcgtgcgc
gatgatgcctcgaccagcgatatcgtcttccagacatccgataccacttggcaggcctat
aatgcctggggcggcgccagcctatattatggcgaagtccccgtcgatccggccgacatg
atcggctacctgccgccgaactgcagctgcgggctgactgcgatcggccgcgcatcggcc
gtcagctacaaccgcccgatcatcaccaataccagcccgatcggcggctcgcatgatttc
atcttcggcgtcgagtcttcggcgatccagtggctggagcagaacggctacgatgtttcc
tatatctccggcgtcgatgcgacgcgcagcggcagcctgctgctgaaccatgatgcctat
ctctctgttggtcatgacgaatactggtcggccgagcagcgcgccaatgtcgaggcggcc
cgcgatgcgggtgtgaacctcgccttctggagcggcaacgagtgctactggaaggtgcgc
tgggaaagcagcatcgacggcagcggccaggcctatcgcaccatggtctgttacaaggag
acctggggcacgagcacggatccgagcgctaccggcaccggcacctggcgcgatccgcgc
tatgccgatccggggcaggagccggagaattcgctgaccggcacgatgttccaggtggac
agctaccgttccgatacgatcaccatcccctacgactattcgaacctgcgcttctggcgc
aacaccgatgtcgccgagctgcaggagggcgagacctataatctggtgcagaacctgctc
ggttacgagtgggattccgacgtcgaaaacggcttccggccggatggcctcatcaacctg
tcgctctcctccatcgcggtcagcacctatctgcgcgactacggcacgacggtcggcgat
gcggtggcgacccacagcctcaccatgtaccgggccgaaagcggcgcgctcgtcttcggc
gccggcaccgtcttctggtcctggggtctcaacgccaaccaccagggagcggcgacgccg
accgatcccaacgtgcagcaggcgatggtcaacatgttcgcggacatgggcatccagccg
accacactcgatgcgagcttgatcctcgcgacccaatcgaccgacgcgttgaagccgacc
tcgtcgatctcgtcgccgatcatcggtgccagcttcgtcgaggggcagcgcgtcaccatc
accggcacggcgcaggatttcggcggcggcatcattgccggtgtggaggtttctaccgac
ggcggccagcactggttcaaggccaccggccgcgagagctggagctataattgggtcgtc
caggcaagcggcacctatacgatcctgtcgcgcgccgtcgacgacagcgtcaatctggag
gcaccatcggccggcaaacaggtcactgtcaccctgccgggcacacagggcctgtggacg
ctggcggaaaagcccgcggtcgaaacggcgatcgatcgcgatccggtcgagctcggcctg
cgcttccaagcgacgacggcaggctcggtgcagggcatccgcttctacaagggcttctac
aataccggcgaccacgtcgtcagcctctggtccggcgacggaacgctgctcgcaaccggc
gtgtcggtgggtgaatcgctctccggctggcagacggtgatgttctcctcgccgatccag
atcgccgccggcacgacctatgtggcttcctatcacagcaacggattcttctccgtcacc
gagaactatttcagcgagccctatgccagcggcgcgctgaaggccgtcgatggcggcggc
gtctttgcctatagtggcaccagcacgttccctggtcagagccccggcggctcgaactat
tgggtagacgtggtcttcgatgccggccccaacagccagccggtcgcaaccgacgacagc
gggctgaccatcggccataacggatcgcttgttatctcgattgccgcactcgtggcaaat
gatgtcgatgccaatggcgatgcgctgaccatcaccgccgtcggcagtgcgctcaacggc
acggttgctctcaacacgcagaccggaaccatcaccttcacgccggctaacaattattcg
ggcccggcaagcttcacctatacgctgtcggacggccgcggcggcacggatcagggcaat
gtcagccttaccgttcaggcaggtccggccggcgagacgctgtttacggggagcgaggga
ccgaccggcagcggcttcaacgacaatacggcgatggaactcggcatgaagttcgtcgct
tcctcaaacggcacgatctcgggcatccgctattacaaggctgccggcgataccagcgtg
cataccggctccatctggagggccgacggcacgctcgtcgccacggtcaccttcaccaac
gagtcgctctccggctggcagacggcaaccttctccacgccgctgcagatcacggcgggt
gcgacctatgtcgcctcctaccacacgaccggcagctatgtggcgaccgcaggctatttc
aacacggcccataccaacggctcgctgacggcgctggccggtgcgaacggcgtctatgcg
gtcggatcgggctcgaccttcccgacccagagctaccagtcgtcgaattactgggtcgat
gtcgtcttcaaccagtcgacgggcaacacggtgccggttgccgccaacgacaacggctat
acgacctattccaacacggccctgtcgattgccgcggccaacctgcttgccaacgacagc
gatggcgatggcgacccgctgagcattaccggcgcaaatggcgcggtcaacggaacggtg
accttcaacagccagaccaacacggtgatcttcacgccgaactcgggctatacgggcgtc
gcaagcttctcctattcgatctcggacgggcatggcggcacggcttcggccaccgtcagc
ctcacggtcaattcgcagcccggcggtggcacgacctcgagcctgtttaccagcgccgac
acctcgggggttgccgccgccaatgatgccaactcggtcgaacttggcgtcaagttcatc
gcttcggccaacggccagatcacgggactcacctattacaggagcgcacaggataccggc
acgcatgtcggctcgctctggaccacgagcggccagctccttggccaggcaaccttcatc
aacgagacggcaagcggctggcagacggtttccttcacgcagccgatcaatgtcacggcc
ggcgtgacctatgtggcgagctaccattccaacggtttctattcggcaaccgcgaactac
ttcacaacagactatacgagcggcgcgctgacggcgccggcaagttcggtcagcggtggc
aacggcgtctatgcctatggcacgggcagcctgttcccgaccgcctcctacaatgccagc
aattactgggtggacgtgctctatcagcagggcgcgcagaatgcggttccggtcgcagca
aatgacagcggctactcgaccaatacgggcacgccgatcaccctccaggcctcggcactg
cttgcaaacgacagcgatgccgatggcgatccgctcacgatcaccggtgtcagcggcgcc
gtcaacggctcggtcgcctacagtgcccaggcccagacggtgaccttcacgccgaccgca
ggctattcgggaccggcgagcttcagctacgcgatatcagacggcaagggcggcacggcc
acggcccaggttgcgctcaccatcaacaacccggctgcaggcccggagcagaacctcttt
gccgccaatgcgacgcctgcaatcgtctccaccaacgacaatcagcaggtcaatctcggc
atgaaattccaggccgatacggcaggctggatcaccggcatccgcttctacaagggtgcc
gacaacacaggcccgcataacggctatctctggactgcctcgggcacgctgctcggcagc
gtcgccttcagcaacgaaacggcaagcggctggcagaccgcgacactcacccagcaggtg
gagatcgccgcggacacgacctacgtcgtttcctacagcaccaacggcaattattcggcg
accggcaattacttcagcgccgatgtgacgaatggcgacctcagggcgctcagcggcagc
aacggcgtctatgcctatgggtcgagcgggttgttcccgagcgccagctataacagcaca
aactactatgtggacgtagcattcagaccgcagctcgcggcgtaa
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integrated database retrieval system
