Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_1914
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Entry
Rleg_1914 CDS
T00926
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rleg_1914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlg03400
]
Rleg_1914
Enzymes [BR:
rlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rleg_1914
DNA repair and recombination proteins [BR:
rlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rleg_1914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
UB2H
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACS56196
UniProt:
C6AXQ5
LinkDB
All DBs
Position
1902417..1905917
Genome browser
AA seq
1166 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLSF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTIGQVRALDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSKL
VFDYYDARLNSGQPSKGMTQGTPYKPVTPGQLYLDSKLFVKTLDALGAIRISPFNEHEGE
ARRVVNVDARQGQRWARSNAEGGGDAERINIFDVVVKHIADRRAAGAKVLVTAWTEGSLE
RLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDLVVIGEQDILGDRM
VRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYADEA
KLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTR
HAPMLTTPEGLYDEFAARFPYDETEDQENAIEAVRSDLGAGRPMDRLVCGDVGFGKTEVA
LRAAFVAAMNGAQVAVVVPTTLLSRQHFKTFSDRFRGLPVRIQQASRLVGAKELALTKKE
VAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLEDVHAFLQSDLPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGWS
PQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHLL
KIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLFL
TRDLPTPEKRLQGAAVIMTQLAEFAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgccggcaggtcttgaaacgctgctgctcgccgagctcgcccgaacgggagagccg
gtcgcctatgtcatgtccgacggccaccgcatggccgatctggagcaaatgctgagcttc
gtcgcccccgacattccggttctcaccctgccggcctgggactgtctgccctatgaccgc
gtctcgccgagcgccgacacctcggcccgccggctggctgcgctcggtggcctcatcgcc
catcgcaagaagccgcatgcggcaatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcaggatgtcatcgaaagcctgagcttttcggcccgtcccggcaaccagctg
cgcatggacgatctcgccggccgcctggagcgcaatggcttcgagcgggtcgccaccgtt
cgcgaagtcggcgaatatgcggtgcgcggcggcattctcgatgtcttcgtgccgggttcc
gaagagccggtccgcctcgatttcttcggcgatacgctggagagcatccgctccttcgat
ccggccagccagcgcacgatcgggcaggtgcgtgccctcgatctcaatccgatgagcgag
gtgacgctgacgcccgatacgatcagccgtttccgcaagaattacctctccgctttcggc
gcgaccacacgcgacgacgcgctctatcttgccgtctccgaaggccgccgttaccccggc
atggagcactggctgccgctcttctacgagaagctcgataccgtcttcgattatttgagc
ggcttccggatcgtcatcgaccatacggtgcgtgaagcagccgaagagcgctccaagctc
gttttcgattattacgacgcccgcctgaactccggccagccgtccaaggggatgacgcag
ggcacgccttacaagccggtgacgccgggccagctctatctcgacagcaagcttttcgtc
aaaaccctcgatgcgctcggcgcgatccgcatcagccccttcaacgagcatgagggcgag
gcgcggcgggtcgtcaatgtcgacgcccgccagggccagcgctgggcccgctcgaacgcc
gaaggcggcggcgatgccgaacgcatcaacatcttcgacgtcgtcgtcaagcatatcgcc
gaccgccgcgccgccggcgcgaaagtgctcgtcaccgcctggaccgaaggctcgctggaa
cgcctgctgcaggtgctgaacgagcacggcctcgaaaaggtcaagccgatcgaggcgctg
aaggatgtcggctcgctggcgagaggcgaggcggccgctgccgtgctcagcctcgaagcc
ggcttcgaggccggcgatctcgtcgtcatcggcgagcaggatatcctcggcgaccgtatg
gtgcgccgctccaagcgccgcaagcgcgccgccgatttcatttcggaggtcgcgggcctc
gacgagggctcgatcgtcgtccacgccgaacacggcatcggccgcttcatcgggctgagg
accatcgaggccgcaggcgcgccgcatgcctgcctcgaactgcaatatgccgacgaggcc
aagctcttcctgccggtcgaaaacatcgatcttctctcgcgctacggcggcgagggcacc
gaagcccagctcgacaagctcggtggcggcgcctggcagatgcgcaaggccaagctcaag
aagcgcctgctcgacatggccgatgcgctgatccgcatcgccgccgagcgcctgacgcgc
cacgcgccgatgctgacgacgccggaaggcctttacgacgaattcgctgcccgcttcccc
tatgacgagaccgaggaccaggaaaacgccatcgaagccgtgcgctccgatctcggtgcc
ggccggccgatggatcgcctcgtctgtggcgacgtcggcttcggcaagaccgaagtggcg
ctgcgcgctgccttcgtcgcggcgatgaacggcgcccaggtcgccgtcgtcgtgccgacg
acactgctttcccgccagcatttcaagaccttctccgaccgtttccgtggtctgccggtg
cgcatccagcaggcctcgcgcctcgtcggcgccaaggaactggcgctgaccaagaaggaa
gtggcggaaggcaagaccgatatcgtcgtcggcacccatgcgctgctcggcgccggcatc
aaattcgccaatctcggtctgctcgtcatcgacgaggaacagcatttcggcgtcaagcac
aaggagaggctgaaggagctgaaaagcgacgtgcacgtgctgacgctgtcggcaacgccg
atcccgcgcaccctgcagctcgccatgaccggtgtgcgcgaattgtcgctgatcaccacc
ccgccggtcgaccgcatggcggtgcgcaccttcatttcgccttttgacagcctggtcatc
cgcgagacgctgatgcgcgagcattatcgcggcggccaaagcttctatgtctgcccaagg
cttgccgatctcgaggacgtgcatgccttcctgcagtcggatttgccggagctgaaggtc
gccgtcgcccatggccagatgccggccggcgaactcgaagacatcatgaacgctttctac
gaaggccgttacgacgtgctgttgtcgaccaccatcgtcgaatccggcctcgacgtaccc
accgccaatacgctgatcgtccaccgcgccgacatgttcggccttgcccagctctatcag
ctgcgcggccgcgtcggccgctcgaaggtgcgcgcttttgcgctcttcaccctgcctgtt
aataaggtgctgacggccaccgccgaacgccgcctcaaggtgctgcagtcgctggatacg
ctcggtgccggcttccagttggcaagccacgatctcgatatccgcggcgccggcaatctg
ctcggcgaggagcagtccggccatatcaaggaggtcggcttcgagctttaccagcagatg
ctggaagaggcggtcgccgaggtcaagggtgtcgacgagatccacgataccggctggtca
ccgcagatctccgtcggcacgacggtgatgatcccggaaggctacgtgcctgatctgcac
ctgcgcatggcgctctaccgccgtctcggcgaaatcaccgaactcaaggagatcgacggc
ttcggcgccgagatgatcgaccgcttcggcccgatgccgatcgaagtccagcacctgctg
aagatcgtctacatcaagtcgctctgccgcaccgccaatgtcgaaaagctcgatgccggc
ccgaagggcgtcgtcgtgcagttccgcaacaaggaattccccaacccggcaaacctcgtc
ggttatatcggcaagcagggcacgatggcgaagatccgccccgaccacagcctgttcctg
acccgcgacctgccgacgccggaaaaacgcctgcagggcgctgccgtcatcatgacgcag
ctggctgaatttgcgaaatag
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