Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_2023
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Entry
Rleg_2023 CDS
T00926
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rleg_2023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlg03019
]
Rleg_2023
03009 Ribosome biogenesis [BR:
rlg03009
]
Rleg_2023
Enzymes [BR:
rlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rleg_2023
Messenger RNA biogenesis [BR:
rlg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rleg_2023
Ribosome biogenesis [BR:
rlg03009
]
Prokaryotic type
rRNA helicases
Rleg_2023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACS56302
UniProt:
C6AYK0
LinkDB
All DBs
Position
complement(2013885..2015840)
Genome browser
AA seq
651 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP
TLLEGRERFGNAAAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS
LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER
RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQDDRNRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT
RLSGTPDFSRAPAPKPYAGKPSRDERPDDTFRGERPKNKFGKGPGGGYAAADNSGGDKRD
SKPWSKKPGKPAFDGPKSDKPKYEGPRSDAPRYEGKGGAGPKAKFSKKKPG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatttaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgtggttac
gccgaactcaccccggtgcagaaggcgatgctcgatccggcgcttgccgcttccgacgcg
ctggtctcggcccagaccggctccggcaaaaccgtcgccttcggcctggcgctggcgccg
acgctgctcgaaggcagggagcgcttcggcaatgccgccgcgccgctcgccctcgtcatc
gccccgacgcgcgagcttgccctgcaggtgaagcgggagctcgaatggctctttgagatg
accggcgcggtgatcgtcagctgcgtcggcggcatggacatccgtagcgagcgtcgctcg
ctcgaacgaggcgcccatatcgtcgtcggcacgcccggtcggctttgcgaccatatccgc
cgcagggcgctcgacatgtcggaactgaaggccgccgtgctcgacgaggccgacgagatg
ctcgatctcggcttccgcgaagaccttgaattcatcctcgatgcggcgccggacgaacgc
cggacgctgatgttttcggcaacggtgccggcggcgatcgccaagcttgccaagagctac
cagcgcgatgccgtgcgcatcagcaccgcggccgaggaaaagcagcatatcgacatcgaa
tatcgcgcgctgatggttgccccgagcgaccgcgagaacgcgatcatcaacgtgctgcgg
tattacgaggcgaccaatgccatcgtgttctgctcgacgcgcgccgccgtcaaccatctg
accgcacgcttcaacaaccgcaatttcgccgtcgtggcgctgtccggcgagttgacgcag
aacgagcgcactcacgcgctgcaggcgatgcgcgacgggcgcgcccgtgtctgcatcgcg
accgacgttgccgcccgcggcatcgacctgccggggctcgatctcgtcatccatgccgac
ctgccgaccaatccggacacgctgctgcaccgcagcggccgaaccggccgggccgggcgc
aagggcatcagcgccatgatcgtgccgctgaatgcacggcgcaaggcagagcgcctgctc
gagaatgccggcatttcggctgcctgggcgcgaccgccttcggccgaggaagtgagcgag
cgcgacgacgagcggctgctcgccgatccgatcttcaacgaaacgccgcaggaggaagag
caggggctggtacaacagcttctcgccagccacggcgccgaaaagctcgccgcagccttc
ctgcgtctttaccgcaccaatcattcggcgccggaggacctcatcgaggttaccgtgcag
gacgaccgcaaccgcaagcgccgcgacaatgccgagccgtacgagccggcgcaaaaggga
ccgcgcgaagatttcggcgccagcgtctggttttccgtctcggtcgggcgcaaacagaat
gccgagccgcgctggctgatcccgatgctctgccgcaacggtaatgtgacgaagcgcgaa
atcggcgcgatcaagatgcagcccgaggaaacttttgtggagatcgctgcggcgagcgcc
gaaagcttcctggcggcgatcggtccgaacaaggcgctggaacgcggcatccgcgtgacc
aggctttccggcacgccggatttcagccgggcgcctgcgccaaaaccctatgccggcaag
ccatctcgcgacgagcggccggacgacacattccgcggcgagcggccgaagaacaagttc
ggcaagggtccgggcggcggatatgccgcggccgataatagcggcggggacaaacgggat
agcaagccctggagcaagaagccgggcaagcccgcgttcgatggcccgaagtccgacaag
ccgaaatacgaaggcccaagatccgacgccccaagatatgagggtaagggcggcgccgga
ccaaaagctaagttctcgaagaagaagcccggctga
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