Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_4319
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Entry
Rleg_4319 CDS
T00926
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlg03019
]
Rleg_4319
Enzymes [BR:
rlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rleg_4319
Messenger RNA biogenesis [BR:
rlg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rleg_4319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_30
Flavi_DEAD
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ACS58559
UniProt:
C6B155
LinkDB
All DBs
Position
complement(4424964..4427429)
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AA seq
821 aa
AA seq
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MTISASLPELPVSHVLPAVASALEKQKRAVLSAPPGAGKTTLVPLYLLGQAWRGDGKIIL
LEPRRLAARAAASRMASLIGEQVGGTVGYRMRLDNRISAATRIEVVTEGVFARMILDDPE
LTGVSVVIFDEFHERSLDADFGLALALDVQSALRDDLRILVMSATLDVERVAALLDHPPV
IESLGRSFPIDIRYQDRPGGERIEDAVTRAILDAHANEAGSILAFLPGQAEITRTVERLQ
GRFGAETLIAPLYGNLSQKEQDAAIRPAYQGTRKIVLATSIAETSITIDGVRIVIDSGLQ
RLPVFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAVRLWHQGQTAALPAFTPPQIL
SSDLSGLVLDLAHWGVQDPASLAFVDQPPETTLREARVLLGQLGALDKDGALTARGKVMR
DLALPPRLAAMVVSAGEVGHARDAAMIAVLLTEQGLGGTSIDIEERLRRFKAERGERAEA
SRRLAGRLASGLDSVASTAPALAGQLLLHAFPDRIAIQRGGRGRFVMANGRGAELPETER
LAGSQMLVIADLTGRAARARVLAAAEVTRGDIEAELPGEIKTDDQIFFDRQSRQIRARRA
TRLGAIVFEETPLPRPSGAAVTQALVDGVRELGLDQLAFSKEAMQLRERIGFLHRTIGEP
WPDVGDDALLSRLDEWFAPFQTEARGLSEISAAGLSNGLMSLVPHELQRDLSRLAPTHFE
APTGQRHPIQYEGEEPVLTIRVQELFGLRQHPAIAGGRLPLLLELTSPAHRPIQTTRDLP
GFWAGSWRDVRADMRGRYPRHPWPERPEDALPTTRAKPRGT
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgacaatcagtgcatccttgccggagcttccggtttcacatgtcctgccggccgtcgcc
tctgcgctggaaaagcaaaaacgcgccgttctttccgccccgcccggcgccggcaagacg
acgctggtaccgctttacctgcttggccaggcctggcgcggcgatggcaagatcatcctg
ctggagccacgtcggctggcggcgcgggcagcggcaagccggatggcatcgctcatcggc
gaacaggtcggcgggacggtcggttaccgcatgcgcctcgacaacaggatatcggccgcg
acacgcatcgaggtggtgaccgaaggggtttttgcccggatgatcctcgacgatccggaa
ctgaccggtgtctcggtggtgatcttcgacgaattccatgagcgttcactggacgcagac
ttcggactcgctctggcgctcgacgtccagtcggcactgcgcgacgatctgcgtatcctc
gtgatgtcggcgaccctcgacgtcgaacgcgtggccgcgctgctcgaccatccacctgtc
atcgaaagcctggggcgcagctttccgatcgatatccgttaccaggatcggccgggcggc
gaacgcatcgaggatgcggtgacgcgggcgatactcgatgcccatgccaatgaggccggc
tcgattctcgccttcctgcccggccaggcggaaatcacccggaccgtggaacgcttgcag
gggcgattcggagccgagacgctgattgcccccctttacggcaatctcagccagaaggag
caggatgcggcgatccggccagcataccaggggacacgcaagatcgtgcttgcgacatcg
atcgccgaaacgtcgatcaccatcgacggcgtcaggatcgtgatcgacagcggcttgcag
cgtctgccggtgttcgaggcgtcgaccggcatcacacggctggagacggtgcgcgtgtcg
cgggcttccgccgatcagcgggcgggccgtgccggacgaacggaaccgggcatcgccgtc
aggctgtggcaccagggacagacagcggcactgccggccttcaccccgccgcagatcctt
tccagcgatctctcggggctggtgctcgacctcgcacattggggcgttcaagacccggca
tcgcttgccttcgtcgatcaaccgccggaaacgacgctgagggaggcgcgggttctgctc
ggccagctcggcgccctcgacaaggacggagcgctgacagcgcgtggcaaggtgatgcgc
gatctcgctttgccgccgcggcttgccgccatggtcgtctcggcgggagaagtgggacac
gcacgcgatgcggcgatgatcgccgtgcttctcaccgaacaggggcttggcggaacgagt
atcgatatcgaggagcggctgcgacgcttcaaggccgagcggggcgagagagcggaggct
tcaaggcggctggcaggacggctggcgagcggcctcgacagcgttgcctcaacggcgccg
gcgcttgccggccagttgctgctgcatgcgttcccggatcgaatagcgattcagcgcggc
gggcgcggccgattcgtgatggcgaacggccgcggagcggagctgcccgaaaccgagagg
ctggccggcagccagatgctggtgattgccgacctgaccggacgggcggcgcgggcgcga
gttctggcggcagccgaggtgacacgcggcgacatcgaagccgagttgcccggtgagatc
aaaaccgacgaccaaatattcttcgaccgacagagccggcaaatccgggcgcggcgggca
acccggctcggtgcgattgtcttcgaagagacgcctttgccgcgcccgtccggggcagca
gtcacccaggcgctggtggacggggtacgcgaactcgggctcgatcagcttgccttctcg
aaggaggccatgcagcttcgcgagcggattggattccttcaccggacgatcggcgagccc
tggcccgatgtcggcgatgatgccctgctttcccggttggacgagtggttcgcacccttt
cagaccgaggcccgcggcctttccgagatttccgcagccgggctttcgaacgggctgatg
tcgctggtaccgcatgagctgcaacgcgaccttagccggcttgcgccaacccatttcgaa
gcgccgaccggccaaaggcatccgatccagtatgagggcgaggagccggtgctgacgatc
cgcgtacaggagctgtttggactgaggcagcatcctgccattgccggtggccgcctgccg
ctgctgctcgagctcacctcgccggcgcaccggccgatccagacgacacgcgacctgccg
ggcttctgggccggctcgtggagggatgtgcgtgctgatatgcgcgggcgctatccccgg
catccctggccggagcggccggaggatgcgttgccgacgacacgggcaaaaccgcgtggt
acatga
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