Rhodoferax lithotrophicus: MIZ03_1136
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Entry
MIZ03_1136 CDS
T10289
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIZ03_1136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlh03019
]
MIZ03_1136
03110 Chaperones and folding catalysts [BR:
rlh03110
]
MIZ03_1136
03029 Mitochondrial biogenesis [BR:
rlh03029
]
MIZ03_1136
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rlh04147
]
MIZ03_1136
Enzymes [BR:
rlh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
MIZ03_1136
Messenger RNA biogenesis [BR:
rlh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
MIZ03_1136
Chaperones and folding catalysts [BR:
rlh03110
]
Heat shock proteins
HSP60 / Chaperonin
MIZ03_1136
Mitochondrial biogenesis [BR:
rlh03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
MIZ03_1136
Exosome [BR:
rlh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MIZ03_1136
Exosomal proteins of other body fluids (saliva and urine)
MIZ03_1136
Exosomal proteins of breast cancer cells
MIZ03_1136
Exosomal proteins of colorectal cancer cells
MIZ03_1136
Exosomal proteins of bladder cancer cells
MIZ03_1136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BCO26256
LinkDB
All DBs
Position
complement(1133622..1135280)
Genome browser
AA seq
552 aa
AA seq
DB search
MAAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI
ELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGI
DKAVEALIAELKKASKPTTTSKEIAQVGSISANSDASIGDIIANAMDKVGKEGVITVEDG
KSLQNELDVVEGMQFDRGYLSPYFINSQEKQSALLDNPFVLLFDKKISNIRDLLPTLEQV
AKAGRPLLIIAEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKV
IAEEVGLTLDKVTLADLGSAKRIEVGKENTIIIDGAGPAADIEARVKQVRVQIEEATSDY
DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALL
RAKQAAGVIKGDNADQDHGIALVLKAIEAPLREIVYNAGGEASVVVNAVMAGTGNYGFNA
ANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTECMVAESPKTEAAGGMGGGDMGG
MGGMGGMGGMGM
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaagacgtaattttcggcggcgaagcccgcgcacgcatggttgaaggcgtg
aacattttggccaacgcggtcaaagtaaccctgggccccaagggtcgtaacgtggtgctg
gagcgctctttcggcgcccccaccgtgaccaaggacggtgtgtccgtggccaaggaaatc
gaactcaaagacaagctgcaaaacatgggcgcgcagatggtcaaggaagtggcttccaag
acttctgacaacgctggcgacggcaccaccaccgccaccgtgctggctcaagccatcgtg
cgcgaaggcatgaagtacgtggccgccggcatgaacccgatggatctgaagcgcggtatc
gacaaggctgtagaagccctgatcgccgaactgaagaaggcatccaaacccaccaccacc
tccaaagaaatcgcccaagtcggctcgatttctgccaactctgacgcatccattggcgac
atcattgccaacgcgatggacaaagtcggcaaagaaggcgtgatcactgtggaagacggc
aagtctctgcaaaacgaactcgacgtggtcgaaggcatgcagtttgaccgtggctacctg
tcaccctacttcatcaacagccaggaaaaacaatccgcgttgctggacaaccccttcgtg
ctgctgttcgacaagaagatcagcaacatccgtgacctgttgcctaccctggaacaagtc
gccaaggctggccgtcccctgttgatcattgctgaagatgtcgaaggcgaagccctggcc
actttggtggtcaacaccatccgcggcatcctgaaggttgtggctgtcaaggctcctggc
tttggtgaccgtcgcaaggccatgctggaagacatcgccatcctgactggcggcaaagtg
atcgctgaagaagttggcctgaccctggacaaagtgactttggctgacctcggttctgcc
aagcgcatcgaagtgggcaaggaaaacaccatcatcatcgacggtgctggcccagcagct
gacatcgaagcccgcgtgaaacaagtgcgtgtacaaatcgaagaagctaccagcgactac
gaccgcgaaaaactgcaagagcgtgtggccaaactggctggcggtgtggccgtgatcaag
gttggcgctgccaccgaagtcgaaatgaaagaaaagaaagcccgtgtggaagatgctctg
cacgctacccgcgctgccgtggaagaaggcattgtggctggtggcggcgtggctctgctg
cgcgccaagcaagctgcgggtgtcatcaagggtgacaacgctgaccaagaccacggcatt
gccctggtgttgaaagccatcgaagctcccctgcgcgaaatcgtttacaacgccggtggc
gaagcctctgtggtggtgaacgctgtcatggcaggcaccggcaactacggcttcaacgcc
gccaacgacacctatggcgacatgatcgaaatgggtattctggaccccaccaaagtgacc
cgcaccgcgctgcaaaacgcagcctctgtggcttcgctgatgttgaccaccgaatgtatg
gtggccgagtcccccaagactgaagccgctggcggcatgggtggcggcgacatgggtggt
atgggcggcatgggtggtatgggcggcatgggcatgtaa
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