Rhodoferax lithotrophicus: MIZ03_1527
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Entry
MIZ03_1527 CDS
T10289
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03420
Nucleotide excision repair
rlh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIZ03_1527
03430 Mismatch repair
MIZ03_1527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlh03400
]
MIZ03_1527
Enzymes [BR:
rlh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIZ03_1527
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MIZ03_1527
MMR (mismatch excision repair)
Other MMR factors
MIZ03_1527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
SpoIIAA-like
Motif
Other DBs
NCBI-ProteinID:
BCO26644
UniProt:
A0ABN6D6Z5
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All DBs
Position
1546463..1548883
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AA seq
806 aa
AA seq
DB search
MFTAITQQSPDAGLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQV
SPGGIMAVTFTNKAAKEMMTRLAAMLPLNVRGMWIGTFHGLCNRLLRAHYKLANLPQTFQ
ILDTQDQLSSIKRLYKQFGIDDERYPAKQMQWFIGGCKEDGLRPAQVVVKDPETRKKVEI
YQLYEEQCQREGVVDFGELMLRSYELLRDNDPIREHYQRRFRHILIDEFQDTNKLQYAWI
KMLAGTGAHSSVDGAFQPTGCVLAVGDDDQSIYAFRGARVGNMTDFVREFGVKHQIKLEE
NYRSGSNILDSANALISNNSKRLGKNLRTAQGPGEPVRVFEATSDFAEANWMVDEMKQLV
REGHERKEIAVLYRSNAQSRVIETALFNAGMPYKVYGGLRFFERAEIKNALAYLRLLENP
RDDTSFMRAVNFPPRGIGARSLELLQDAARATGCALSDAVSGLSGKAGANIGAFLAGIEV
LNEQRQGKKLKEIVELVLKHSGLRAHYEADREGADRVENLDELVNAAESFVSIEGFGRDV
VALPVDELGNVLTQSPASQGLDLNQPVQDIPAPDLETGETLSPLAAFLTHAALEAGDNQA
QAGQDAIQLMTVHASKGLEFDCVFITGMEEGLFPHENSMTDRDSLEEERRLMYVAITRAR
KRLYLSHSQTRMLHGQTRYNLKSRFFEELPEEALKWITPKHQGFGGGFGSAGVTSNSGAT
HAYHTSARGQFGTDYSKYTTAAAPVPVQKTPPGGLQVKQKVFHAKFGEGTVLSLEGSGDD
ARAQINFPRHGVKWLALSVAKLTPVP
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtttactgcaattacacaacaaagcccggacgcaggtctgctgcacaaccttaaccct
gaacagttggcggctgtcacgctgccagctgagcacgcgctgatcctcgccggggctggt
tcgggcaagacccgggtgctgactacccgcatcgcctggctgttgcaaaccggccaggtt
tcgcccggcggcatcatggcggtgaccttcaccaacaaggccgccaaggagatgatgacc
cgcctggcagccatgctgccgctgaacgtgcgcggcatgtggattggcaccttccacggc
ctgtgcaaccgcctgctgcgtgcccactacaagttggccaacctgccgcaaaccttccag
atcctcgacacgcaagaccagctctccagcatcaagcgcctgtacaaacagtttggcatt
gatgacgagcgttacccagccaaacaaatgcaatggttcattggtggctgcaaggaagat
ggcctgcgcccggcccaggtggtggtcaaagatcccgaaacccgcaaaaaagtcgagatt
taccagctctatgaagagcaatgtcagcgcgaaggcgtggtcgattttggtgagctgatg
ctgcgcagctacgagctgctgcgcgacaacgaccccatccgcgaacattaccagcgccgc
tttcgccacatcctgatcgatgagtttcaagacaccaacaagctgcaatacgcctggatc
aagatgcttgcaggcacgggcgcacacagcagcgtggacggcgctttccagcccaccggt
tgtgtgctggccgtgggcgacgatgaccagagcatctacgcctttcgcggggcacgcgtg
ggcaacatgaccgactttgtgcgcgaatttggcgtgaagcatcagatcaagctggaggaa
aactaccgcagcggcagcaacatcctggacagtgccaacgccttgatcagcaacaacagc
aagcgcctgggcaaaaacctgcgcaccgcccaaggccccggtgaaccggtgcgggtgttt
gaggccaccagtgactttgctgaagccaactggatggttgacgagatgaagcaactggtg
cgcgaaggccatgagcgcaaagagattgccgtgctgtaccgctccaacgcccaaagccgg
gtgattgagactgcgctgttcaacgccggcatgccctacaaggtttatggtggcctgcgc
ttttttgagcgtgccgaaatcaagaacgcgctggcctacctgcgtctgttggaaaacccg
cgcgacgacaccagcttcatgcgggcggtgaactttccgccgcgcggcattggcgcacgc
agcctggagctgctgcaagatgcggcccgcgccaccggctgcgccttgagtgatgccgtg
agcgggttgagcggcaaagccggtgccaacattggcgcatttttggcgggcattgaggtg
cttaacgagcaaagacaaggtaaaaagctcaaagaaatagttgagttggtactgaaacat
agtggtttacgcgcgcactatgaagccgaccgagaaggggcggacagagttgagaatctg
gatgaactggtcaacgccgccgagagttttgtcagcattgaaggctttggccgggatgtc
gtggcgctgccggtggatgagcttggcaatgtattgacgcaatcacctgcctcacaaggc
ctggacctgaatcagcccgtacaggatattcctgcacctgatcttgagaccggtgaaacc
ctgtcgcccctggccgccttcctgacccacgccgcactcgaagccggtgacaaccaggcc
caagccgggcaggatgccattcaactcatgacggtgcacgccagcaaggggctggaattt
gactgcgtgtttatcaccggcatggaagagggcttgttcccacacgaaaactcgatgacg
gatcgcgacagcctggaggaagaacgccgcctgatgtacgtggccatcacccgtgcccgc
aaacgcctctacctgagccattcgcaaacccgcatgttgcacggccagacccgctacaac
ctgaaaagccgattctttgaagagctgcccgaagaggccttgaagtggatcacgcccaaa
catcagggctttggtggtggatttggttctgctggagtcacttcaaattcaggagctact
cacgcttaccacacaagcgctagaggccaatttggcacggattattcaaaatacaccacc
gctgcggcgcccgtgccggtacaaaaaacgccccccgggggtttgcaggtcaaacaaaaa
gtgttccatgccaagtttggcgaaggcacggtgctgagcctggaaggcagtggcgacgat
gcccgcgcccagatcaactttccgcgccacggcgtgaaatggctggcgctgagtgtggcc
aaattgaccccggtgccttga
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