KEGG   Rhodoferax lithotrophicus: MIZ03_1573
Entry
MIZ03_1573        CDS       T10289                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rlh  Rhodoferax lithotrophicus
Pathway
rlh03030  DNA replication
rlh03410  Base excision repair
rlh03420  Nucleotide excision repair
rlh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rlh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MIZ03_1573
   03410 Base excision repair
    MIZ03_1573
   03420 Nucleotide excision repair
    MIZ03_1573
   03440 Homologous recombination
    MIZ03_1573
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rlh03032]
    MIZ03_1573
   03400 DNA repair and recombination proteins [BR:rlh03400]
    MIZ03_1573
Enzymes [BR:rlh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     MIZ03_1573
DNA replication proteins [BR:rlh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MIZ03_1573
DNA repair and recombination proteins [BR:rlh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     MIZ03_1573
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MIZ03_1573
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_5 HHH_2
Other DBs
NCBI-ProteinID: BCO26690
UniProt: A0ABM7MK73
LinkDB
Position
1591114..1593960
AA seq 948 aa
MNNAPLQTLLLVDGSSYLYRAFHAMPDLRAVPGDPTSPPTGAIRGMINMLQSLRKDVPAA
FAVCVFDAKGPTFRDELYPQYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLDVPGVEADD
VIGTLAATAAAQGMQVIVSSGDKDLAQLVTERITIIDTMNGRKRDVEGVTTEFGVPPHLM
RDYQALVGDTVDNVPGVPKVGPKTAAKWLNEFGSLDAIVANAANIKGAVGENLRNTLEWL
PTGRKLVTIKTDCDLSNWLPDLPAMQSIAVGAMQTGALAIFYEKYGFKGLARALGAAATE
ATGSENVAGYAKRSADGSDPISVRALSKERDLFDDPEPSTTAAAPRVSSVTYDTILTWDA
FDAWLAKLQAAELVALDTETTSLDEMRAHIVGISFSVTPGEAAYIPLAHSYPDAPPQLPL
AEVLAKLRPWLEDASHPKLGQHVKYDRHVFANHGIEVQGYAHDTMLQSYVLEVTKPHGLA
SLAERHLGRTGISFEDLCGKGANQICFDQVDVAKAAEYSCEDSDMTLDVHHTLWPMLERD
DKLRFIYELEIKSSEALYRVERNGVLIDAPILAAQSHDLGTRILQLEKEAHELAGQPFNL
SSPKQIGEIFFTKLGLPVVKKTPTGAPSTDDEVLQKLAEDYPLPAKILEHRGLSKLKGTY
TDKLAQLALPSTGRVHTHYAQAVAVTGRLSSNDPNLQNIPVRTPEGRRVREAFVAPPGSV
IASADYSQIELRIMAHISGDAALLLAFHDGMDVHRATAAEIFNVERAQVSSEQRRYAKVI
NFGLIYGMSAYGLAKALGIDNTAAKNYIERYFDRYPGVKLYMENTRALAKAQGYVETVFG
RRLYLPEINSPNGPRRSGAERAAINAPMQGTAADLIKLSMVKVQQVIDAQKLATKMIMQV
HDELVFEVPEAEIDWVRHEVPKLMAGVAHLKVPLLAEVGVGPNWDKAH
NT seq 2847 nt   +upstreamnt  +downstreamnt
atgaacaatgctcctctccaaaccctgttgctggtcgatggttccagctacctgtaccgc
gccttccacgccatgcccgatctgcgtgctgtgccgggtgacccgaccagcccgcccacc
ggggcgatccgcggcatgatcaacatgctgcaaagcctgcgcaaggatgtgcctgccgca
ttcgctgtctgtgtgtttgatgccaaaggccctacttttcgtgatgagttgtacccacag
tacaaagcccatcgctcacccatgccagacgacttgcgcagccagatcgaaccgatccac
gaggtggtgcgcctgatgggctggaaggtgctggatgtgcccggtgtcgaggccgatgac
gtgattgggacgctggcagccactgcggcggcgcaaggtatgcaggtgattgtgagcagt
ggtgacaaagacctggcgcagttggtcaccgagcgcatcaccatcatcgacaccatgaat
ggccgtaaacgtgacgtggagggtgtcaccaccgagttcggtgtgccaccccatctgatg
cgggattaccaggcactggtgggcgacaccgtggacaacgtgcccggtgtgcccaaggtg
gggcccaagactgcggccaagtggctcaacgaatttggttcgctggatgccatcgtggcc
aacgccgccaacatcaaaggtgcggtgggtgagaatttgcgcaacaccctggaatggttg
cccaccgggcgcaagctcgtcaccatcaaaaccgactgcgacttgagcaactggttgccg
gatctgccagctatgcaatcaatagctgttggcgcaatgcagacgggcgctttagccatt
ttttatgaaaaatatgggttcaagggactggctcgggcgttgggtgcggctgccacagaa
gccactggttcagaaaatgtagccggatacgcgaagcgcagcgcagatggctctgacccc
atttctgtgcgggcactcagcaaagagcgtgacctgttcgatgacccggagccctccaca
acggctgcagctccccgtgtcagcagcgtcacttacgacaccatcctgacctgggacgcg
ttcgatgcttggttggccaagctgcaggccgccgagctggttgcacttgacaccgaaacc
acctcgctggatgagatgcgggcccacattgttggcatcagcttcagcgtgactcccggc
gaggcggcctacatcccgctggcccatagttacccggatgcaccgccgcagttgcccttg
gccgaggtgctggccaaactccgaccctggctggaggatgccagccaccccaagctcggg
cagcatgtcaaatatgaccgccatgtgtttgccaaccacggcattgaggtgcagggctac
gcgcacgacaccatgctgcaaagctatgtgctggaagtcaccaagccgcatgggctggcc
agcctggccgagcggcatctggggcgcaccggcatcagttttgaagacctgtgtggcaaa
ggggccaaccagatctgttttgaccaggtggacgtggccaaagccgccgaatattcgtgt
gaagactccgacatgacgctggatgtacatcacaccctgtggccgatgctggagcgtgat
gacaagttgcgttttatctacgagctggaaatcaagagcagtgaggctttgtaccgggtg
gagcgcaacggtgtgttgattgatgcgccgattctggcggcgcaaagtcatgatctcggg
acacgtattctgcaattggaaaaagaggcgcacgagctggcggggcagcctttcaacctg
agcagccccaagcagattggcgaaattttctttaccaaactcggcctgccggtggtcaaa
aaaaccccgacaggcgcgcccagtaccgatgacgaggtgctgcaaaaactggcagaagac
tacccgctgccggccaaaatcctggagcaccgcggcctgtccaaactcaagggcacctac
accgacaagctggcccagctggctttgccctccaccggccgggtgcacacccattacgcg
caagccgtggcggtaaccgggcgtttgagcagcaacgacccgaacctgcaaaacattccg
gtgcgtacccccgaaggccgccgtgtgcgcgaggcctttgtggccccgccgggcagcgtg
attgccagtgccgattacagccagatcgagttacgcatcatggcgcacatcagtggggat
gcggcgctgctgctggcgtttcacgatggcatggacgtgcaccgcgccaccgctgccgaa
attttcaacgtcgagcgggcccaggtcagcagtgagcagcgtcgttatgccaaggtgatc
aattttggcctgatctacggcatgagtgcctacggtctggccaaagcccttggcattgac
aacaccgccgccaaaaactacatcgaacgctactttgaccgctaccccggcgtgaagctg
tacatggaaaatacccgtgcgctggccaaggcgcagggttatgtggaaactgtgtttggc
agaaggctttacctgcccgagatcaactcgcccaacggcccacgtcgcagcggggccgag
cgtgccgccatcaacgccccgatgcagggcacggcagcagacctgatcaagctcagcatg
gtcaaggtgcagcaagtgattgacgcgcaaaagctggccaccaaaatgatcatgcaggtg
catgacgaactggtgtttgaggtgcctgaggctgaaatagactgggtacgccatgaagtg
cccaaattgatggccggtgtggcacacctgaaagtgcctttgctggccgaggtgggtgtg
gggcccaattgggacaaagcacattga

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