Rhodoferax lithotrophicus: MIZ03_1610
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Entry
MIZ03_1610 CDS
T10289
Name
(GenBank) bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03410
Base excision repair
Brite
Enzymes [BR:
rlh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MIZ03_1610
Transcription factors [BR:
rlh03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MIZ03_1610
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MIZ03_1610
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BCO26725
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Position
complement(1630389..1631948)
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AA seq
519 aa
AA seq
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MIPCMNSPDTPDDMDACYLALKAHDARFDGRFFTGVTSTGIYCRPVCRVRTPKRENCRFF
NLAAQAEHAGFRPCLRCRPELAPRQLMPGMSTGKAWSMQDASAILATQAAALMDAPAPSG
LPAMTVQRLALRLGISDRHLRRIFEAQMGVSPLQYLQTRRLLSAKQLLTDTSLAVAQVAE
LSGFASVRRFNTAFVTHYGLNPTQLRHTPESQHTPASKEGIHVRLSYRPPYDVAAMLHFL
ATRQITGLEVMDPINASLGKTMALHNGQHLATGWVQARWDEARCRVNLQVSDALAEVLPQ
VIARVRALLDLDADPQAINQVLHNHFPQGDGLRLPGTLDGFELAVRAVLGQQITVAAART
LAERLVTHFGEPIVTPLAGLSRLFPTPQALVAASADALGALGIVKQRQAAIQALARAVTS
GELCLDTVADVPSTMAQLQTLPGIGDWTANYIAMRALHWPDAFPSGDVALHKALGVRNTP
LPAKAALTASHAWQPWRSYAVIRAWATLPRHTKPDKSTQ
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgatcccttgcatgaacagtcccgacacccctgatgatatggatgcctgctacctcgcg
ctcaaggcacatgatgcgcggtttgatggccggtttttcacgggcgtgacatcaaccggt
atttattgccgcccggtatgccgcgtgcgcacgcccaagcgggaaaactgccgttttttc
aacctggccgcgcaggccgagcatgccggttttcgcccctgcctgcgctgccgcccggaa
ctcgccccgcgccagttgatgcctggcatgagtaccgggaaggcctggtcgatgcaggat
gcctcggccattctggcaactcaggctgcagcgctcatggacgctcctgcaccttcaggc
ctccctgcgatgacggtgcagcgcctggccctgcggctgggcatcagcgaccgccatctg
cgccgcatttttgaggcgcagatgggggtatcacccctgcagtacctgcaaacgcgccgg
ttactgagtgccaaacagctgctcaccgatacttcgctggccgtggcccaggtggccgag
ctcagcggctttgccagtgtgcggcgcttcaacaccgcctttgtcacccactacggcctg
aacccgacgcagttgcgccacacccctgaatcacaacacacgcctgccagcaaagagggc
attcatgtccggctgagctaccggcccccttacgatgtggcggccatgctgcacttcttg
gcgacccgtcaaatcaccgggctggaggtgatggaccccataaacgccagcctgggcaaa
accatggcgctgcacaacggccaacatctcgctacgggctgggtgcaggcccgttgggac
gaagcacgctgccgcgtcaacctgcaggtaagcgacgctttggcagaggtgctgccgcag
gtcatcgcccgtgtgcgtgcgctgctggacctggatgccgacccgcaggccatcaaccaa
gtgctgcacaaccattttccccagggcgacggcttgcgcctgcccggcacgctggatggt
tttgagctggcggtgcgcgcggtgctgggccagcaaatcacggtggcggcagcacgcaca
ctggctgagcggctggtgacacactttggcgaacccatcgtcaccccgctggccgggttg
agccgcttgtttccaacgccccaggccctggtggcagccagcgccgatgccctaggtgct
ttgggtatcgtcaagcaaagacaggcggccattcaggcactggcccgtgcggtgaccagt
ggtgagctgtgcctggacacggtggccgatgttcccagcaccatggcccaattgcagacc
ctgcccggcatcggtgactggacagccaactacattgccatgcgcgccctgcactggccc
gatgcgtttccctccggtgatgtggccttacacaaagccctgggcgtgcggaatacaccc
ctccccgccaaggccgcactgacggcatcccacgcctggcaaccctggcgcagttatgcg
gtgatccgagcctgggccaccctgccccgacacaccaagcccgacaagtccactcaatag
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