Rhodoferax lithotrophicus: MIZ03_2408
Help
Entry
MIZ03_2408 CDS
T10289
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03420
Nucleotide excision repair
rlh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIZ03_2408
03430 Mismatch repair
MIZ03_2408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlh03400
]
MIZ03_2408
Enzymes [BR:
rlh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIZ03_2408
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MIZ03_2408
MMR (mismatch excision repair)
Other MMR factors
MIZ03_2408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
DEAD
SLFN-g3_helicase
DUF6074
Motif
Other DBs
NCBI-ProteinID:
BCO27520
LinkDB
All DBs
Position
complement(2400465..2402498)
Genome browser
AA seq
677 aa
AA seq
DB search
MNQPSSADKSKAVAHFNPKTIKPTDEQQAIQISPARVVLVEANAGAAKTTVLALRMAEAW
TRRTRPEQILALTYTDAACQALKAALKKLGLPAVVIHQFRIQTFEAFCTQVLRELEDRAA
PVYTEADQLSPVLWQAVERVADDPGERWPDHFLMPTPGDYGMVDVFVQQSEYLKGTMLDV
LERNDQPVTPDYAETIGIEYTQLRIYLAFEKIRMADPQRPLFRGATDATYDLAHLLFEDG
EVSTCHSWPSHVKVVVVDEMHDMNRAMFSVLQKVLTTNRCFFCGVGDVDQVIHKANGADA
RFMRDELAELSTHAIVRYPLTHSFRFNTSVARLAGKVANKRYASKAPYPSQVRFSPYNSV
EACAAQVLADAEAFRAQHKSKTASCAILLRHPHQSVQIENALIEDGMPYETLGFKSYVLR
PEVLFVRGLLAVATDDLRSVTEVKTREEVMRALLFFSGSSIVVDGREHESQQDLLASAIR
SVTDNPLFLTSFFENQVLRNAPASIQKRLLAAVDIIRKPSGPDMLSALLKALHIQTLLGD
ALVSQRRRLEAESNLRWLSHMAERFDSPAHLFQSLNATEQKQQKQKASKAEPLLLASIAS
VKGLEFDAVLLPYLAQGEFPDPTADMAEEFNTLYVGLTRVRKELTIYPSTTSPSLFMKSL
GLTEAEGDAALADIRKE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaccctccagcgcagacaagtccaaagcggtcgcacacttcaaccccaaaacc
attaaacccactgacgagcagcaggccattcaaatcagcccggcgcgggtagtccttgtg
gaggccaacgccggtgctgctaaaaccactgtactggcgctgcgtatggccgaggcctgg
acccggcgtacccggcccgagcaaattttggcgctcacctacaccgatgccgcctgccag
gcactcaaagctgccctgaaaaagctcggccttccggcagtcgtcattcatcaattcaga
atccagacctttgaggctttttgcacccaggtgctgcgtgagctggaagaccgcgccgcc
ccggtgtacaccgaagccgaccaactcagcccggtgttgtggcaggcggttgagcgcgtg
gccgacgaccctggtgaacgctggccggaccactttctgatgccgacaccgggcgactac
ggcatggtggatgtgtttgtgcagcaaagtgaatacctcaagggcacgatgctcgacgtg
ctggagcgtaatgaccagcccgtgacccccgactatgccgagaccattggcatcgagtac
acccagctcaggatttacctggcgtttgaaaaaatccgcatggctgacccgcaacggcca
ctgtttcgcggggccacggatgccacttacgacctggcgcatctgctgtttgaggacggc
gaagtcagcacctgccacagttggcccagccatgtgaaagtggtggtggtggatgagatg
cacgacatgaaccgcgccatgttcagcgttctgcaaaaagtgctgaccaccaaccgctgc
ttcttctgcggcgtgggcgacgtggaccaggtgattcacaaagccaacggggccgatgcc
cgcttcatgcgcgacgaactggccgagctgagcacccacgccatcgtcagatacccgctg
acccacagctttcgcttcaacaccagcgtggcccggctggccggcaaagtcgccaacaaa
cgctacgcctccaaagcaccctaccccagccaggtcaggttctcaccttacaacagcgta
gaggcctgcgccgcccaagtgctggccgatgccgaagcctttcgggctcaacacaagtcc
aagactgccagttgcgcgattttgctgcgccacccacaccagtcggtgcagattgaaaac
gcgctgatcgaagacggcatgccctacgagacgctcggtttcaaaagctacgtgctgcgg
cccgaggtgctgtttgtgcgtggcctgctggccgtggccaccgacgacctgcgcagcgtc
accgaagtcaaaacccgcgaagaagtcatgcgtgcgctgctgtttttctcaggctccagc
atcgtggtggatggccgcgagcatgaatcgcaacaggatttgctggcctcggcgatccgc
agcgtcaccgacaacccgctgtttttgacctcgttttttgagaatcaggtgctgcgcaat
gcgcccgccagcattcagaagcgcctgctggcagcggtggacatcatccgcaagccaagt
ggcccggacatgttgagcgccctgctgaaagcgctgcacatccagactctgctgggtgat
gccctggtgtcacagcgccgcagactggaggctgaatcgaatttgcgctggctctcccac
atggctgagcgttttgacagcccggcccacctgttccagagtctgaacgccaccgagcaa
aaacagcagaagcaaaaagccagcaaagccgaacccctgctgctggccagcattgccagt
gtgaagggcctggaatttgacgcggtgctgctgccctatctggcccaaggcgagtttccc
gaccccacggcggatatggccgaggagttcaacaccttgtacgtcggccttacccgcgtg
cgcaaagagctgacaatttaccccagcacaacatccccaagccttttcatgaaaagtctg
gggttgaccgaagctgagggagatgctgcgctggcagacattcgcaaggaataa
DBGET
integrated database retrieval system
