Rhodoferax lithotrophicus: MIZ03_2793
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Entry
MIZ03_2793 CDS
T10289
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIZ03_2793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlh03021
]
MIZ03_2793
03019 Messenger RNA biogenesis [BR:
rlh03019
]
MIZ03_2793
Transcription machinery [BR:
rlh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MIZ03_2793
Messenger RNA biogenesis [BR:
rlh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MIZ03_2793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA
S1CSD-TOTE-2
Spore_III_AA
ResIII
Aida_C2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCO27902
UniProt:
A0ABN6D773
LinkDB
All DBs
Position
2849895..2851157
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEDLEIENTGRMRKQELMFAIIKKRARAGEQIFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLEKVN
GGGPEENKHKVMFENLTPLFPKEQMRLERDIKGEENITGRIIDIIAPIGKGQRALLVAPP
KSGKTVMMQHIAHAISANYPNSHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKRF
LGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQL
NRSGTRREELLLAPEILQKTRILRQFLYNMDEIESMEMVLKQMRATKNNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaaacgaactcaaggcactgcacgtgtcagaagtcctcaagcaagctgaagat
cttgagattgaaaatacgggccgcatgcgcaaacaagagctgatgtttgccatcattaaa
aaacgtgcccgcgctggtgagcaaatttttgccgacggcgtgctggaaatcctgcccgat
ggttttggctttttgcgcagccctgacaccagttacaccgccagtaccgacgacatctac
atcagccccagccaggtgcgccgctttaacctgcacaccggtgacatgattgaaggtgaa
gtgcgcacccccaaagacggtgaacgttactttgccctgaacaagctggaaaaagtcaac
ggtggtggcccggaagaaaacaaacacaaggtgatgtttgaaaacctgacaccgctgttc
cccaaagagcagatgcgtctggagcgcgacatcaagggcgaagaaaacatcaccgggcgc
atcatcgatatcattgccccgattggcaaaggccagcgcgccctgctggtagccccgccc
aagagcggcaaaacggtgatgatgcaacacattgcccacgccatctcggccaattacccc
aacagccacatgatggtgctgctggtggacgaacgcccggaagaagtgaccgaaatgcag
cgcaccgtcaagggtgaggtgattgcctccaccttcgacgaaccggccgcccgccacgtg
cacgtggccgaaatggtgatcgagcgcgccaagcgtctggttgaattgaaaaaagacgtg
gtgattttgctcgactccattacccgcctggcccgcgcctacaacaacgtggtgccctcc
tccggcaaagtgctgactggcggcgtggattccaatgcattacaacgccccaaacgcttt
ctgggtgcagcgcgtaatgtcgaagaaggtggttcactgacgatcatcgctacggccctg
gtcgacaccggcagccgcatggacgaggtgatttttgaagagttcaaaggcactggcaat
tctgaaatccacctggatcgccgtttgtatgaaaaacgcgtgttcccatcgatccagctc
aaccgcagcggcacccgtcgtgaagaattgctgctggcacccgaaatcttgcaaaaaacc
cgcatcctgcgtcaattcctgtacaacatggacgaaattgaatccatggagatggtgctc
aagcaaatgcgtgccaccaaaaacaacagcgaatttttcgacatgatgcgccgcggcggc
taa
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