Rhodoferax lithotrophicus: MIZ03_3006
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Entry
MIZ03_3006 CDS
T10289
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03410
Base excision repair
rlh03430
Mismatch repair
rlh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MIZ03_3006
03430 Mismatch repair
MIZ03_3006
03440 Homologous recombination
MIZ03_3006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlh03400
]
MIZ03_3006
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MIZ03_3006
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MIZ03_3006
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MIZ03_3006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2017
Motif
Other DBs
NCBI-ProteinID:
BCO28110
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Position
3072975..3074702
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AA seq
575 aa
AA seq
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MKLIVRDIPPRSVWALEQAGIHPLLAQLYAARGVHNPQELDDALARLLPPASMKGTAEAA
RLLADAMAAKQKLCIVADYDCDGATACATAIRGLRLLGAQHVDYIVPDRVQDGYGLTPPI
SERVKANGADVLITVDNGIASFEGVARARALGLQVLVTDHHLPAMRNGQIELPDAHVIVN
PNQPGCAFESKAIAGVGVMFYVLLALRAELRQRGVFDASNQPKLDTLLPLVALGTVADVV
KLDSNNRRLVAQGLKRVRALIQPAGLAALFVAASRETKSATTFDFGFALGPRINAAGRLS
DMTLGIECLLTDDTNRAQELAQTLDAINRERREIEGAMREQALAVAESLFEDAQETPPAI
CVFDPEFHEGVVGIVAARIKDKFHRPSFVFANSGATGHGHELKGSGRSIAGFHLRDALDL
VAKRYPGVLLRFGGHAMAAGCTILEEHLDTFEQGLNEVAKEWLDAATLMRRLYTDGALKP
EYRRPDLVDTLHHEVWGQGFAAPTFSEELEVVSQRLVGEKHLSLKLKHCGQPVDGIWFGR
TEPLPARVILAFRLDVDSWRGERRVRFLVEAAESA
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaatagtaagagatattccccccagaagcgtttgggcattggagcaagcgggc
attcaccccttgctggcgcagctttacgccgctcgtggcgtgcacaacccgcaggagctg
gacgacgcgctggcccggctgctcccccccgccagcatgaaaggcaccgcagaggcggcc
cgcctgctggccgatgcgatggccgccaagcaaaaactttgcatcgtggccgactacgac
tgcgatggggccaccgcctgtgccaccgccatccggggcttgcgcctgctgggtgcgcag
catgtggactacatcgtgcccgaccgcgtgcaagacggctatggcctgaccccaccgatt
tcagagcgtgtcaaagccaacggggccgatgtgctgatcacggtggacaacggcattgcc
agctttgaaggcgtggcccgcgcccgcgccttgggcctgcaagtgctggtgaccgaccac
cacctgcccgccatgcgcaatggtcagattgagttgcccgatgcccatgtgatcgtcaac
cccaaccagcccggctgcgccttcgagagcaaagccattgccggtgtcggggtgatgttt
tacgtgctgctggccttgcgggccgagctgcgccaacggggtgtgtttgatgccagcaac
cagcccaagctggataccctgctgccgctggtcgccctgggcacggtggccgacgtggtc
aagctcgacagcaacaaccgccgccttgtggctcaagggctaaaacgggttagagcgctt
attcagcctgcgggactagctgcattatttgtagcagcctcgcgtgaaaccaaaagcgcc
accacctttgattttggctttgcgctgggcccacgcatcaacgccgccggacgtttgagc
gacatgaccctgggcattgaatgcctgctgaccgacgacacaaatcgcgcccaggaactg
gcccaaacactggatgccatcaaccgcgaacggcgtgaaattgaaggcgcgatgcgcgaa
caggcgctggcggtagccgagtccttgtttgaagatgcccaagaaactccgccagccatc
tgcgtgtttgaccccgagtttcacgaaggtgtggtgggcatcgtggcggcccgcatcaag
gacaagtttcaccggcccagttttgtgtttgccaacagtggagccaccgggcacgggcac
gaactcaaaggctcggggcgttcgattgccggttttcacctgcgcgacgcactggatctg
gtagccaagcgctaccccggtgtgctgctgcgctttggtggccacgccatggcggcgggc
tgcaccattctggaagaacacttggacacctttgagcaaggtctgaacgaagtcgccaag
gaatggctggatgcggccaccttgatgcgccgcctgtacaccgacggtgccttgaaaccc
gaataccgtcgccccgatctggtcgacaccctgcaccatgaggtgtggggccagggtttt
gccgccccgaccttcagcgaagagctggaggtggtgtcgcaacgcctggtgggtgaaaaa
cacctgtcgctcaagctcaaacactgcggccagccggtcgatggcatctggtttggccgc
accgaacctctgccagcacgagtcatattggcctttcggctggatgtggacagctggcgc
ggtgaacgcagagtacggtttttggtagaagcggcagaatcggcctga
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