Rhodoferax lithotrophicus: MIZ03_3873
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Entry
MIZ03_3873 CDS
T10289
Name
(GenBank) hypothetical protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MIZ03_3873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlh03400
]
MIZ03_3873
Enzymes [BR:
rlh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
MIZ03_3873
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MIZ03_3873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BCO28963
LinkDB
All DBs
Position
complement(3962588..3963577)
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AA seq
329 aa
AA seq
DB search
MSLNLDTRQRAMLDEMGVHVWWPAALPADLGEAQVAMDNEADSAYMESARGQNDIKIPSA
AVIPPSLPADNVSAAPVASPVQLATPTPPQVGPSPSHHSGPQTTARAPSPTQVTTLPDGI
ARMDWPQIQGTLADCQACAMCLGRRASVLAAPDVPTPCDWLVVGDPPDEAQERLGLPFVE
DAGLLLDNMLRAVGVQRWAPWAAPAALAAEPSGRAYLTHVLKCRPALMRAPSADELATCA
HYLRREIALTQPKVILAMGRFAMQTLLSDTPPESAKLPLGKLRGQVWQFAGVPLVVTYPP
SYLLRNPQDKGKAWADLCLALDAVQGRLS
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaaccttgacacccgccaacgcgccatgctggatgaaatgggcgtacacgtg
tggtggcctgcggccttgccagccgacctgggtgaggcacaagttgctatggataatgaa
gctgacagcgcttatatggaaagcgctagaggccaaaatgatataaaaatcccaagcgca
gcagtgatcccgccctctctgcctgcagacaatgtgtccgccgcacccgtggccagcccc
gtccagcttgccacccccaccccgccgcaagtggggcctagcccgagtcatcattcaggc
ccccagaccactgcccgtgcaccaagcccaacccaggtcaccactttgccggacggcatt
gcccgcatggactggccacaaatacaagggacactggccgattgccaggcttgcgccatg
tgtctgggccgccgtgccagcgtgctggctgcgccggatgtgcccaccccctgcgattgg
ttggtggtgggtgacccgccggatgaagcccaggagcgtttgggcctgccgtttgtggaa
gatgcgggcttgttgctggacaacatgttgcgcgcagtcggggtgcagcgttgggctcca
tgggccgcgcccgcggccttggccgctgagcccagcgggcgcgcttacctgacgcatgtg
ctcaagtgccggcccgccttgatgcgtgcgccatcggccgatgagttggccacctgcgcg
cattacctgcgccgtgaaattgccctgacacagcccaaagtgatccttgccatggggcgt
tttgccatgcagaccttgctttctgacacaccacccgagagcgccaaactgccgctgggc
aaattgcgtggccaggtatggcagtttgccggtgtgccgctggtggtgacttacccgccg
tcttatctgctgcgcaacccgcaggacaagggcaaagcctgggccgacctgtgcctggcg
ctggacgcggtgcaaggccgcctttcctga
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