Rhodoferax lithotrophicus: MIZ03_4068
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Entry
MIZ03_4068 CDS
T10289
Name
(GenBank) DNA polymerase III PolC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03030
DNA replication
rlh03430
Mismatch repair
rlh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MIZ03_4068
03430 Mismatch repair
MIZ03_4068
03440 Homologous recombination
MIZ03_4068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlh03032
]
MIZ03_4068
03400 DNA repair and recombination proteins [BR:
rlh03400
]
MIZ03_4068
Enzymes [BR:
rlh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MIZ03_4068
DNA replication proteins [BR:
rlh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MIZ03_4068
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MIZ03_4068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
PAS_4
DNA_polI_exo1
Fn3_Dep-1_3rd
Vps54_N
Motif
Other DBs
NCBI-ProteinID:
BCO29156
UniProt:
A0ABM7MS05
LinkDB
All DBs
Position
complement(4186515..4188680)
Genome browser
AA seq
721 aa
AA seq
DB search
MRLDRRFILAIVVIGFASVAWLALTIGLVYSTLESSQREGVVSQLGPRLPLIGLTWLAGL
FAIAATLRWLFRRYATAPARLVEQTQVLLAAPKAAPMNHQGTKETKALADVIFQLASQRD
VLREDVAAQIAQASQSVQTEKNRLAALMAELTQSVVVCNLDGRIILYNSRARLQFKTLSV
APTLAGGAELVGIGRSIYAVFERQLVAHALESIQQRISRGAGSPSAQFVTTTQAGQLLKV
QMAPVRNVDVSGTAAEISGFVLMLDNVTRAFEEEHVRDQLLHGLTEGSRSSLANIQAAVD
MLSYPDLETDMRERFLTVVREEVHSMSERITSMTQKATQGLKARWPLEEMLGADVLLATQ
RRIEARSKRSVTLENLDASIWLRVDSFSLTQALDYLAMRLVDEFDIKFFRLRLAANGNRA
QLDLIWTGQAMSTETVMSWEMDSMRFGAESTPLTVRDVVERHGGEMWFERERIRHEAFFR
FLLPLASVQEQLEATQILQNDSRPEYYDFDLFQSTDQTSVLDDRLLSDLSFTVFDTETTG
LNPSDGDEIIQIGAARIVNGKLLKQESFEQLVNPGRLIPAATIPIHGITQDMVQGKPPIT
DVLPAFYAFAQDTVLVAHNAAFDMKFLQLQEKNTGLVFNHPVLDTLLLSAVVHPNQESHR
LEAIAERFNITVLGRHTALGDAFVTAEVWIRLLPLLQAMGITTLRQAREAAQKTYYARLK
Y
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggatcgtcgcttcattctggccattgtggtcatcggctttgccagtgtggcc
tggctggctctgaccatcggattggtttactccacgctggaatcctcccagcgcgaggga
gttgtttcgcaactcggtcctcgcctgcctttgatcgggttaacctggttggccgggttg
tttgccattgctgcaacgctgcgctggctgtttcgccgctatgccacggcaccggcccgt
ttggtggagcagacccaggtgttgctggccgcccccaaagcggcccctatgaaccaccaa
ggtaccaaagagacaaaggctttggccgatgtgatttttcaattggcatcccaacgcgac
gtgttgcgtgaagacgtggcagcacaaatcgcccaggccagtcaaagtgtgcagacggaa
aaaaaccgcttggcggcattgatggccgaactgacacaaagtgtggtggtatgtaatctg
gatggccgcattattttgtacaacagccgtgcacggctgcaattcaaaacactttcggtg
gcacccacgttggctggtggagcagagctggtgggcatcggacgctccatttatgccgtg
tttgagcgtcaactggtggcgcacgctctggagagtattcagcagcgcatcagtaggggg
gctggtagcccctccgcacaatttgtcaccaccacacaagctggccaattgctcaaggta
caaatggccccggtgcgtaatgtggatgtgagtggtactgcggcagagatcagtggtttt
gtgctgatgctggataacgtgacacgggcttttgaagaagagcatgtgcgcgaccagttg
ttgcatggattgaccgaaggcagccgttcttcccttgccaatattcaggcagcggtagac
atgttgtcttaccccgacctggaaaccgacatgcgtgaacgctttttgactgtggtgcgt
gaagaagtacacagtatgagcgagcgaatcaccagcatgacgcaaaaagccacgcaaggc
ctcaaagcccgctggccactggaggaaatgttaggtgccgatgtgttgctggcaactcag
cgccgtattgaagcgcgtagcaagcgctcggtgacgttggaaaacctggatgcttccatc
tggctcagggtcgacagtttcagcctgacgcaagcgctggattatttggcgatgcggttg
gtggatgagtttgacatcaaattctttcgcttgcgcctggcggccaatggcaaccgtgcc
cagcttgacctgatctggacgggccaggccatgagcaccgaaaccgtgatgagctgggaa
atggacagcatgcgctttggcgcagagagcacaccactgaccgtgcgtgacgtggtggag
cgccacggcggcgagatgtggtttgaacgtgaacgtatccgtcacgaagcgttcttcagg
tttttgttgcctttggccagtgtgcaagagcaactggaagccacgcagattctgcaaaac
gacagccgtccagagtattacgactttgacctgtttcaaagcaccgaccagaccagtgtg
ctggatgaccgtttgctcagcgacttgtccttcaccgtgtttgacaccgagaccaccggg
ctcaatccgtccgatggtgacgagattatccagatcggtgcagcgcgtattgtgaacggc
aaactgctcaagcaagaaagctttgagcaactggtcaaccccgggcgcttgatccctgcg
gccaccattccgatccatggcatcacccaggacatggtgcaaggcaagccccccatcacc
gatgtgttacctgccttttatgcgtttgcgcaagacaccgtgctggtggcgcacaacgcg
gcgtttgacatgaaatttttgcaattacaggagaaaaacaccggcctggttttcaatcac
ccggtgctggacaccttgctgctctcggccgtggtgcaccccaaccaggagtcacaccgg
ctggaagccattgccgagcgtttcaacatcaccgtgctgggccgtcacacggctttgggg
gatgcttttgtgactgcagaggtgtggatacgtttgttgcctttgcttcaagccatgggc
atcacgactttgcgtcaggcgcgtgaggccgcacaaaaaacctactatgcaaggttaaag
tactga
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