Roseobacter litoralis: RLO149_c003060
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Entry
RLO149_c003060 CDS
T01572
Name
(GenBank) putative exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rli
Roseobacter litoralis
Pathway
rli03030
DNA replication
rli03430
Mismatch repair
rli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RLO149_c003060
03430 Mismatch repair
RLO149_c003060
03440 Homologous recombination
RLO149_c003060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rli03032
]
RLO149_c003060
03400 DNA repair and recombination proteins [BR:
rli03400
]
RLO149_c003060
Enzymes [BR:
rli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RLO149_c003060
DNA replication proteins [BR:
rli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RLO149_c003060
DNA repair and recombination proteins [BR:
rli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RLO149_c003060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
Rv2179c-like
DNA_pol_A_exo1
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
AEI92336
UniProt:
F7ZGN6
LinkDB
All DBs
Position
complement(303454..304851)
Genome browser
AA seq
465 aa
AA seq
DB search
MKNLSLRLRVFLFFCLTAIGSIAICLGALYMGFRQLGEGDALSAFITSGVIAGFGILGLV
VLIWLLFDENVSKPIEALAASLRVRTHVDIGTEIEEETAKYLGDLAPAVCAIHRKLRDET
RASSEAVVERTARLDAQRSQLLQILSDIPVAVIVARQDHHIILYDGQAADLMERECPARL
KGSVFDYLDKQSVIEALAALKKQNALRHEIALKGRSGAVYKGHIRVFGADAGYTLMLEPL
RPDAARPLVYDFDLLDIEEPTSLDQTRLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVN
GKIIEGEVFDTLVNPGRTIPPGSTAVHQINDAMVADAPGFDVACRAFHQFAEHAVIVAHN
APFDMAFLRRQCRNQDYAFDNPVLDTVHLSAVVFGGSAEHTLDALCNRLNVHIPDDVRHT
GLGDALATAKALVALIPVLEARGFTTFEQVRAEIQKHSRILKVEA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctcagcctccggctccgggtctttctgttcttttgcctgactgccattggc
agtatcgcgatctgccttggcgcgctttacatggggtttcgccagttgggggagggtgat
gcgctgtcggccttcatcacgtcaggtgtgatcgcgggctttggcattctgggtctagtg
gtcctgatctggcttttgttcgacgaaaacgtcagcaaaccgatcgaggcattggccgcc
agtttgcgcgtgcgcacccacgtcgatatcggcacagaaatcgaagaggaaaccgcgaaa
taccttggtgatctggcaccggctgtctgtgcgatccaccgcaagctcagggacgagacg
cgcgcctcctccgaggcggtggtggaacgcaccgcgcggctggatgcgcagcgctcgcaa
ctgttgcaaatcctgtctgacattcccgtcgccgtgatcgtggcgcgacaggatcaccac
atcatcctctatgacgggcaggccgccgacctgatggaacgggaatgccctgcccgcctc
aaaggatcggtgtttgactaccttgacaaacaatccgtgattgaggccctggctgcgctg
aaaaaacaaaacgccctgcgccatgagatcgccctcaaaggccgctccggcgcggtttac
aaaggccacatccgggtttttggggcagatgcgggctacaccttgatgctggaaccactg
cgccccgatgccgcgcgcccgctggtctatgactttgacctgctcgacatcgaagaacct
acatcgctggatcaaaccagactgcgtgatctgacattcgttgtttttgacagcgaaacg
accggtcttgatccacatacggacgaagttgtgcaactgggcgccgtgcgtgtcgtcaac
ggcaagatcatcgaaggcgaagtctttgatacgctggtcaatcccggccggaccatcccg
ccggggtccacggcggtgcatcagatcaatgatgccatggtcgccgatgcgccgggcttt
gatgtcgcctgccgcgcgttccaccaattcgccgaacacgctgtgatcgtcgcccataac
gccccctttgatatggcattcctcagacgccagtgtcgaaatcaggactacgcgttcgac
aaccccgttctagacacggtgcatctgtccgcggtggtttttggcggctcggcagaacat
acgctggatgccttatgcaaccgtctgaacgtgcatatccccgatgacgtgcgccacacc
gggcttggcgatgcgcttgccacggccaaggcgctggttgcgctgatcccggtgcttgag
gcgcggggttttacaacttttgaacaggtccgcgcggaaattcagaaacacagccgcatt
ctgaaggttgaagcctaa
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