Roseobacter litoralis: RLO149_c004230
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Entry
RLO149_c004230 CDS
T01572
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rli
Roseobacter litoralis
Pathway
rli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RLO149_c004230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rli03021
]
RLO149_c004230 (rpoC)
03400 DNA repair and recombination proteins [BR:
rli03400
]
RLO149_c004230 (rpoC)
Enzymes [BR:
rli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RLO149_c004230 (rpoC)
Transcription machinery [BR:
rli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RLO149_c004230 (rpoC)
DNA repair and recombination proteins [BR:
rli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RLO149_c004230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AEI92452
UniProt:
F7ZHP1
LinkDB
All DBs
Position
448481..452725
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTNNPFNPVAPVKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTELTYGQMMTEEEYMDAQDIYGMDAFT
ANIGAEAIREMLAAIDLEAEADQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTLERAGMKGEGMVFGSVEEVQHAL
DAGVVHLHSKITARITQIDENGLEVMQRFDTTPGRIRLGALLPLNAKAPFELVNRLLRKK
EVQQIIDTVYRYCGQKESVIFCDHIMTMGFREAFKAGISFGKDDMLIPDTKWPIVGETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGSISASQTDVDGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMRDCGTETSITAVAAVNDGEVVSSLSERILGRV
VAEDIVRPGTDEVIIASGTLIDERMADSVEEAGVASARIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNSGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASHSGKVVFDNAQ
TLENEAGEIMVMGRNMKLIIHDDNGEERASHKVGYGTKLFVTEGQKVVRGDKLFEWDPYT
LPIIAEKSGMAKFVDLVSGIAIKDETDDATGMTQKIVIDWRSATKGNELKPEIILVDADG
EPVRNDAGNPVTYPMSVDAVLSIEDQTEIKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGKDYKNKRRIAIESSEDPDHKVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQESGDTTLLKGEHVDKQEFDQANEKALSKGGRPAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATMKMRRVAQDRDNVVIEARRE
EAEAAAALAAPVVDDMVGGDVFDQPVHHEEDSRD
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaaccccgttgcaccggttaagactttcgac
gagatcaaggtctctctggcatcgccagagcggatcttgtcttggtctttcggtgagatc
aagaaacccgaaacaatcaactaccggacgttcaagcctgagcgggacggtcttttctgt
gcgcgtatctttggcccgatcaaggattacgaatgcctctgcggtaaatacaagcgcatg
aaatatcgcggcgttgtctgcgagaaatgcggtgtggaagtcacgctgcaaaaagtgcgc
cgtgagcggatgggccacatcgagcttgcctcgccggttgcgcatatctggttcctgaaa
tcgctgccgtcgcgcatcggtctgatgctggacatgacactgcgtgatctggaacgcgtg
ctgtatttcgaaaactacgtggtgatcgaaccgggtctgacagaactcacctacggtcag
atgatgaccgaagaagagtatatggatgcgcaagacatctatggcatggacgctttcacc
gccaacatcggtgccgaagcgatccgcgaaatgctggccgcgattgatctggaagccgaa
gcagaccagttgcgtgctgatctgaaagaagccacaggtgagctgaagcccaagaagatc
atcaagcgcctgaaggtcgtggaatctttcctcgaatccggcaaccgcccggagtggatg
gttctgaccgtgatccctgtgattccgcctgaactgcgcccgctggtaccactggatggc
ggtcgttttgcgacctccgacctcaacgatctttaccgtcgggtgattaaccggaacaac
cgtctcaagcgtctgatcgaattgcgcgcacctgatatcattgtgcgtaacgaaaagcgg
atgttgcaggaatctgtcgatgcgctgtttgacaatggccgtcgcggccgtgtgatcacg
ggtgccaacaagcgtccgctgaaatcgctgtctgacatgctgaagggtaaacaaggccgc
ttccgtcaaaaccttttgggcaaacgtgtcgacttctcgggtcgttcggtcatcgtgacc
ggtcccgaactcaagctgcaccaatgtggtctgcccaaaaagatggcgctcgaactgttc
aagccgttcatctattcgcgacttgaggccaaagggctttcttcgactgtgaagcaggcg
aaaaagctggtcgaaaaagaacgtcccgaagtttgggatatcctcgacgaggtcatccgc
gaacaccctgtgatgctgaaccgtgcgccgacgttgcaccgtttgggcattcaggcgttt
gaacccgtgctgattgaaggcaaagcgatccagctgcacccgttggtctgttccgccttt
aacgcggactttgatggggaccagatggccgttcacgtgccgctgagccttgaggcgcag
cttgaagcgcgcgttttgatgatgtccacgaacaacgttctgtcccctgcaaacggcgct
ccgatcatcgtgccgtcgcaggatatgatcttgggtctgtattatacgacccttgagcgt
gcgggcatgaagggcgaagggatggtctttggctccgtcgaagaagtgcagcatgcgctt
gacgccggggtggtccatttgcattccaagatcaccgcgcggatcacacagatcgacgag
aatggtctcgaagtgatgcagcggtttgacacgacaccgggccggatccgtcttggcgcg
ctgttgccgctcaatgccaaggcaccgttcgagttggtcaaccgtttgctgcgtaagaaa
gaagtgcagcagatcatcgacaccgtctaccgttattgcggtcagaaggaatccgtcatt
ttctgtgaccacatcatgaccatgggtttccgggaagcgttcaaagccgggatttccttt
ggcaaggacgacatgctgatccccgataccaaatggccgatcgtcggtgagacgcgcgac
caggttaaggatttcgaacagcaatacatggacggtctgatcactcagggcgagaagtac
aacaaagtggtcgatgcctggtctaagtgtaacgacaaggtcacggacgcgatgatgggc
tctatctcggccagccagacggacgtggacggctccgaaatggaaccgaactcggtctat
atgatggcacactccggtgcgcgtggatcggtgacacagatgaaacagctcggcgggatg
cgcggcctgatggccaagccgaacggcgacatcatcgaaacgccgatcatttccaacttt
aaggaaggtctgaccgttcttgagtacttcaactccacgcacggcgcgcggaagggtctg
tcggatactgctttgaaaacggcgaactccggttatctgacgcggcgattggttgatgtt
gcacaggactgcatcgtgcgcatgcgcgattgtggcaccgaaacgtcaatcacagccgtc
gctgctgtgaacgatggtgaagttgtgtcgtcgctgagcgaacgtattctgggccgtgtc
gtggccgaggatatcgtgcgtccgggcacggatgaggtgatcattgcctctggtactttg
atcgacgaacgcatggcggattctgttgaagaagcaggtgtcgcatcggcgcggatcaga
agcccgctgacctgtgaggccgaagagggcgtttgtgccatgtgctatggtcgtgacctc
gcacgcggtacgatggtcaattctggtgaggctgtcggcatcatcgcggcacagtccatt
ggtgaaccgggtacacagttgaccatgcggacgttccacattggcggtgttgcacagggt
gggcagcagtccttcctcgaggcaagccattccggcaaagttgtctttgacaatgctcaa
acgctcgaaaacgaggcgggcgagatcatggtcatgggtcggaacatgaaactcatcatt
catgatgataatggggaggagcgtgccagccacaaagtagggtatggtacaaagctgttt
gttaccgaaggccaaaaagtggtgcgcggcgacaagctctttgaatgggatccctacacg
ttgccgatcattgcggaaaaatccggcatggcgaaattcgtggacctcgtgtccgggatc
gccatcaaggatgagaccgatgatgcaaccggcatgacacagaagatcgtgatcgactgg
cgttccgcgaccaagggcaacgagctgaagcctgaaatcattctggtagatgccgatggg
gaacctgtacgcaacgatgcgggcaatccggtgacctatccgatgtccgttgatgcggtt
ctgtccattgaggaccaaaccgagatcaaggcgggcgatgtggttgcgcgtatcccgcgt
gagggtgccaagaccaaggacatcaccggtggtttgccacgtgtggccgaactctttgag
gcacgtcgccccaaagatcacgctatcattgcggaaatcgatggctatgtgcgctacggc
aaggactataagaacaaacgccgtatcgcgattgagtcctccgaagatccggatcacaag
gtcgaatacatggtgcccaagggcaagcacatcccggttgcggaaggtgactttgtccag
aagggcgactacatcatggacggtaatccggcgccgcatgacattcttgccattatgggt
gtcgaagcgctggcggattacatgatcgacgaagtgcaggatgtctaccgtctgcaaggc
gtaaagatcaacgacaagcacatcgaagtcatcgtgcgtcagatgctgcagaagtgggaa
atccaggaatctggggacaccacgctgctcaagggcgaacatgtcgacaagcaggagttt
gatcaggcgaacgaaaaagcgctgagcaaaggcggccgccccgcaaagggcgaaccgatc
ctgctggggatcaccaaggcgtcgttgcagacccgcagctttatttctgcggcgtccttc
caggaaaccacgcgtgttcttacggaagcctctgtgcaaggtaagaaagacaagctggtc
ggtctgaaagaaaacgtcatcgtgggtcgcctgatcccagccgggactggtggcgcgacc
atgaaaatgcgtcgtgtggctcaggatcgcgacaatgttgtgatcgaagcacgccgtgaa
gaagcagaagcggcagcggccctcgcagcacctgtggtggacgatatggtgggtggcgac
gtctttgatcagccagtgcatcacgaggaagacagccgggactaa
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integrated database retrieval system
