Roseobacter litoralis: RLO149_c018080
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Entry
RLO149_c018080 CDS
T01572
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rli
Roseobacter litoralis
Pathway
rli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RLO149_c018080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rli03400
]
RLO149_c018080 (mfd)
Enzymes [BR:
rli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RLO149_c018080 (mfd)
DNA repair and recombination proteins [BR:
rli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RLO149_c018080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
MFD_D3
Cas3-like_C_2
AAA_30
AAA_16
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEI93798
UniProt:
F7ZIS9
LinkDB
All DBs
Position
1856015..1859479
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AA seq
1154 aa
AA seq
DB search
MTAQTHITISGVPEGYDARVLLDEVEKHSAPLMHIARDDKRLAALQAALRFMAPDMPVVV
FPGWDCLPYDRISPNADISAQRMATLAALIHGMPERFILLTTLNAASQKIPARAVLKDAA
FSAKVGSRIDEKALRNFLVRMGFVQSPTVTEPGDYAVRGGIIDIFPPGDMGPVRLDLFGD
TLDGARRFDSATQRTTEKLDLVELAPVSEIILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWLPFFHDGLETLFDYLPEASVSLDDQITAVREARWDSIADQYETRRIA
MSNRSKMDSVYKPCPPEALYLNNAAWDAEVAGRRVLQLAPLPQPTGLNVTDAGARIGRNF
APERQQESLSLFGALADHIKAKMAAGPVLIASYSEGARERLTGLIEDEGLAEAIPVPNAA
RIGKRGLYLAVWALEHGFEAPGLTVISEQDVLGDRLIRSTRKKRRAENFLTETQSLSPGD
LIVHVDHGIGRYRGLEVITAAGAAHECILLEYAESSKLYLPVENIELLSKYGHEEGLLDR
LGGGAWQAKKARLKERIREIAEKLIRVAAERALRKAPVLEPPPGMWDAFSARFPYTETDD
QLRAIEDVIDDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVALIAPTTLLARQ
HYKSFAERFRGFPINVRQLSRFVSTKDANATRDGMSRGTVDIVIGTHALLAQGIRFQNLG
LLVIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRL
AIRTYVSEFDTVTLREALLREHYRGGQSFYVVPRISDLPEIEAFLTEQLPELTYVVAHGQ
MAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGFELYQSMLEEAIAKIRTGELEGLSEADDQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSSLTTKVELEGFAAELIDRFGKLPREVNTLMLVVRIKAMCKRAGIAKLDGGPK
GATIQFHNDKFASPQGLVSFIEDQRGMAKVKDNKIVVRRDWKADADKIKGAFAIARDLAE
KVIAEKKRKKAKAS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgcaaacgcatattaccatatcaggcgtgccggaaggctatgacgcccgcgtc
cttctcgacgaggttgaaaagcacagcgcgccgctgatgcatatcgcacgcgatgacaaa
cggcttgctgcgttgcaggctgcgctacgtttcatggcccctgatatgcctgtggtggtt
tttcccggatgggactgtctgccttatgatcgcatctcacccaatgctgatatctccgca
cagcggatggcgacgctcgcggcattgatacacggcatgccggagcggtttattctgctg
accacgctgaacgccgccagtcagaaaatccccgcgcgcgccgtgctcaaggatgcggct
ttcagcgccaaagtcggcagtcggattgacgaaaaggccttgcgcaattttctggtgcgc
atgggctttgtgcaaagcccgaccgtgacggaacccggtgattatgcggtgcggggcggt
atcattgatatctttccacccggggatatggggcctgtgcggcttgatctttttggtgac
acgcttgatggcgcgcggcgttttgacagtgccacgcagcggaccaccgaaaagctggac
cttgttgagcttgcgccggtctccgagatcattctggatgaggctgccatcacccggttt
cgccagaactaccggatcgaatttggcgcggcaggcaccgatgaccccctgtatgaagcc
atcagcgccgggcgcaagcaccaaggggccgaacactggttgccgtttttccatgacggg
ttggaaacgctgtttgattacttgccagaggcttctgtgtcgctggatgatcagatcacc
gccgtgcgcgaggcccgctgggacagcatcgcggatcaatatgaaacgcgccgcattgcc
atgtccaatcgttccaagatggacagtgtgtacaagccttgtccaccagaggcgctttat
ctgaacaatgctgcgtgggacgcggaagttgccgggcgccgcgtgctgcaacttgcgccc
ttgccacagccaacaggcttgaatgtcacggacgcaggtgcgcggatcgggcggaacttc
gcacccgaacgacaacaggaaagcctgagcctgttcggggctttagccgatcatattaaa
gcaaaaatggcggctggccctgtcctgattgccagctattctgaaggcgcgcgcgaacgg
ttgaccgggttgatcgaagatgaaggtctggccgaagccataccggtacccaacgcggca
cggatcggcaaacgtggtctgtatctggcggtctgggcgctggagcacgggtttgaagct
cccggcctcaccgtcatctcagagcaggatgttctgggtgatcggctgatccgtagcacg
cgcaaaaaacgccgcgccgagaatttcctgaccgagacacaatcgctcagccccggcgat
ttgatcgtgcacgtggatcacggcattggccgctacagggggctggaagtgatcacggca
gcaggggccgcgcatgagtgtattctgctggaatatgcggaatcgtccaagctgtatctg
cctgtcgaaaacattgagctgttgtcgaaatacggccacgaagagggattgctcgaccgt
ctgggcggcggggcgtggcaggccaaaaaggcccgcctcaaagagcgcattcgcgagatt
gccgaaaagctcatccgcgttgcggcggaacgtgcattgcgcaaagcgcccgtgttagag
ccaccgccgggcatgtgggatgccttcagcgcgcgttttccctatacggaaaccgatgat
cagttgcgcgccattgaggatgtgattgatgacatgacgtcgggcaatccgatggaccgg
ctgatctgcggcgatgtgggttttggcaagaccgaagtcgccatgcgtgccgcctttgtg
gcggccatgtccggggttcaggttgccctgatcgcgccgacgaccctgctggcgcgccag
cactacaagagctttgccgagaggttccgcggctttccgatcaacgtccggcagctcagt
cgctttgtctcgaccaaggacgcgaacgcgacgcgcgacggtatgagccgcggcacggtt
gatatcgtgatcggcacccatgcgctattggctcaaggcattcggtttcaaaacctcggg
ctgctggtcatcgacgaggaacagcatttcggcgtgacccacaaagagcgcctgaaacaa
ctgcgcaccgacatccatgtgctgacgctgaccgcaacaccgatcccgcgcacgctgcag
cttagcctgaccggggtgcgcgacctcagcatcattggcacaccgcccgtggaccggctg
gcgatccggacctatgtcagtgaatttgacacggtcaccctgcgcgaagccttgctgcgc
gagcactatcgcggcgggcagtcgttttacgtcgttccgcgcatctctgacctgccggag
attgaggctttcctgaccgaacaactgcccgaactgacctatgtggtggcgcatgggcag
atggcggcgggtgagcttgatgaccggatgaacgccttttacgacggtaaattcgacatt
ctgttggccaccacgattgttgaatccggtctggatattccaaccgccaatacgatggtt
gtgcatagagcggatatgtttggtcttgcgcagctttatcagatcagggggcgcgtgggg
cggtcgaaaacccgcgcctatgcctatctgacaacgaaaccgcgcgcgcgactgactgcg
acggcggaaaaacgtctgcgtgtgctctccagccttgatacgctgggggcggggttcact
ttggccagtcaggatctggatattcgcggcgcgggcaatctgcttggcgaagagcaatcg
ggccagatgcgcgatgtgggctttgaactttaccaatccatgcttgaagaagcgattgcc
aagatccggaccggtgaactcgaaggcctgtcagaggcggacgatcaatgggctccgcag
atcaacctcggcgtgcctgtcctgatcccagaggactatgtgccagatctggatgtgcgg
cttgggctgtatcgtcgtttgagcagcctcaccaccaaggttgaactggaagggtttgcc
gctgaattgatcgaccggttcggcaagcttccgcgcgaggtcaacacgctgatgctggtg
gtgcggatcaaggcaatgtgcaaaagggccgggatcgccaaattggatggcgggccgaaa
ggggcgacgatccagttccacaacgataaatttgcctcaccacaagggctagtgtccttt
atcgaggatcagcgcgggatggccaaggtcaaagacaacaagatcgttgtgcggcgcgac
tggaaagcggatgccgacaagatcaaaggggcatttgccatcgcgcgggatctggccgaa
aaggtcatcgccgagaaaaagcgcaaaaaggcgaaggccagctag
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