Roseobacter litoralis: RLO149_c022630
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Entry
RLO149_c022630 CDS
T01572
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rli
Roseobacter litoralis
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rli03016
]
RLO149_c022630
Enzymes [BR:
rli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RLO149_c022630
Transfer RNA biogenesis [BR:
rli03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RLO149_c022630
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEI94238
UniProt:
F7ZAP2
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All DBs
Position
complement(2316247..2317410)
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AA seq
387 aa
AA seq
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MKTITTTQALEEFCTQAAQFDYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDPL
VPGLSLEPLYALFRDTSVVKVFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVCGFGEQVG
YETLVRRIAKQPLDKTSRFTDWSRRPLTDAQMKYALADVTHLRDVYEFLAEKLEETGRSR
WVREELTVLTSPETYIIPPMDAWRRVKTRTNSPKFLAVVRELAAFREIYAQERNVPRNRV
FKDDALIELASNKPKTQEELGRSRLLLREGRRGDVADGILQAVQRGVECPQQDMPKPDRS
RDKLQVNPALADLLRVLLKAKTESAGVAAKLIAPAADLDAIAAGLRDVPALNGWRREVFG
EDALRLCEGKIALAAEGANVRIVNLDA
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccatcacaacgacacaagcgctggaagaattctgcacacaggcagcccagttt
gattatgtgacggtcgacacggaattcctcagagagcgcacatattattccaagctgtgc
cttattcagcttgccatgccgggtgaggatgacagcaccggctgtattgttgacccgctg
gtgcccggtctgtcgcttgaaccgctttacgcgttgtttcgcgacacatccgtggtcaag
gtgtttcacgccgcacggcaggatcttgagattttttacgtcgatgccgaggtctttccc
gagcccttgtttgacacgcaggtcgctgccatggtctgcggctttggcgaacaggtgggc
tatgaaacactggtgcgccggatcgccaaacagccgctggacaagacctcgcgtttcacc
gattggtcgcgccgcccgttgacggatgcgcagatgaaatatgccttggccgatgtcacc
catctgcgtgatgtctacgaatttctcgcagaaaagcttgaagaaaccgggcgcagccgc
tgggtgcgcgaggaactgaccgttctgaccagcccggaaacctatatcattccaccgatg
gacgcttggcggcgggtaaaaacgcggacgaattcacccaagtttctggccgttgtgcgg
gaactggcggcgttccgcgaaatctatgcgcaggagcgcaacgtcccacgtaaccgggtg
ttcaaggatgatgcgctgatcgaactggcctcgaacaaaccaaagacacaggaagagttg
gggcgctcgcgcctgttgctgcgcgaggggcgacggggcgatgttgcggatggcattttg
caggcggtccagcgcggcgtggaatgcccgcaacaagacatgccaaaaccggaccgatca
cgcgacaaactgcaggtgaaccctgcactggcggatttgttgcgcgtattgctcaaggcc
aaaacggaaagtgcgggtgttgcggccaagctgattgcgcccgccgctgatctggatgcg
attgccgcgggtctgcgcgatgtgccagcgttgaacggatggcggcgcgaagtctttggg
gaagatgcactgcgtctgtgtgagggaaagattgccctcgccgcggaaggcgcaaacgtg
cgtatcgtcaacctcgacgcatga
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