Roseobacter litoralis: RLO149_c029250
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Entry
RLO149_c029250 CDS
T01572
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rli
Roseobacter litoralis
Pathway
rli02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RLO149_c029250 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rli03021
]
RLO149_c029250 (rpoD)
Transcription machinery [BR:
rli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RLO149_c029250 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AEI94881
UniProt:
F7ZH39
LinkDB
All DBs
Position
complement(2978776..2980758)
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AA seq
660 aa
AA seq
DB search
MAAKDTNDDAKPDDQDAGHSLDMSQTAVKKMIAEAREKGYITYDQLNTVLPPDQVNSEQI
EDVMSMLSEMGINIIEDEDAEEEEAKGSTELATTEGTREVTLGSGTSEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMISGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGNQLDEDVSVGEPVVATEGAAPQKEEASPELDADGNPIANDDDDDEDEQANMS
LAAMEAALKPQVLEALDIIADDYTKLSEMQDSRISATLNEDGSFNAGDEALYQKLRSEIV
LLVNELHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRREFVDEYRGYELDPN
WMERMAEKSGRGWQMFIERSSDKVEELRTDMAQVGQYVGLDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagataccaacgacgacgcaaagccagacgatcaggatgcgggacattcg
cttgatatgagccagactgcggtcaagaaaatgatcgctgaggcgcgcgagaaaggctac
atcacctacgaccagctcaacactgtgctgccgcccgatcaggtgaactccgaacagatc
gaagatgtgatgtcgatgctgtctgaaatgggcatcaacatcatcgaagacgaagatgcc
gaagaagaagaagccaaaggctcgaccgagctggcgaccactgaaggcacccgcgaagtc
acgcttgggtccggcacgagtgagaaactggaccgcacggacgatccggtgcgcatgtac
ctgcgcgaaatggggtcggttgaactgctgagtcgcgaaggcgaaatcgcgattgccaag
cggatcgaagccggtcgcaacacaatgatttcagggctttgtgaaagcccgctgaccttt
caggcgattacgatctggcgcgacgaactcttgtctgaggacattctgctgcgcgatgtg
attgacctcgaagcgacatttggcaaccagttggacgaagacgtcagtgttggcgagccg
gttgtcgcgacagaaggggcggcccctcaaaaagaagaggcgagcccggagcttgatgcc
gatggcaatccgattgccaatgacgacgacgatgatgaagacgaacaggccaacatgagc
ctcgcggcaatggaggcggcgttgaagccgcaggtgcttgaggcgcttgatatcattgcc
gacgactataccaagttgagcgagatgcaggatagccggatttcggcgacactgaatgaa
gacggcagctttaacgcaggcgatgaggctttgtatcaaaagctgcgctcagagattgtt
ctgttggtcaacgaattgcacctgcacaacaaccgtatcgaagcgcttatcgaccagctt
tacggcattaaccgtcggatcatgcaaatcgactccgcgatggtgaaactggcggatcag
gcccgtatcaaccggcgcgagttcgtcgacgaataccgtgggtatgagcttgatcccaat
tggatggagcggatggccgaaaaatccggtcgcggctggcagatgttcatcgaacgctcc
agcgacaaggtcgaagagctgcgcacggatatggcccaggttggtcagtatgtgggcctt
gatatctccgaattccgccggatcgtgcagcaggtgcaaaagggcgagaaagaagcgcgt
caggccaagaaagaaatggtcgaagccaacctgcggctcgtcatttccattgccaaaaaa
tacacgaaccgcggcttgcaattccttgatcttattcaggaaggcaacatcggcctgatg
aaggccgttgataaatttgaataccgccgggggtataaattctcgacctatgccacgtgg
tggatccgacaggcgatcacgcgatctattgcggatcaggcgcggacaatccgtattcct
gtgcatatgatcgagacgatcaacaaactggtgcgcacgggccgccagatgctgcacgag
atcgggcgtgaaccgacgcctgaggaactggctgaaaagttgcagatgccgcttgagaaa
gtgcgcaaggtgatgaagatcgccaaggagccgatttctcttgagacgccgattggcgac
gaggaagacagccagcttggtgacttcattgaggacaagaatgccgttctgcctttggac
agcgccattcaggaaaacctcaaggaaaccacgacccgcgttttggcatcactcaccccg
cgtgaagagcgcgtattgcgcatgcgtttcggcatcgggatgaacacggaccatacgctc
gaagaggtaggacagcagttctcggtcacccgcgaacgcatccgccagattgaggcgaaa
gcactgcgcaaactcaagcatccgagccgatcacgcaagctgcggagtttcctcgatcag
tga
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