Roseobacter litoralis: RLO149_c042300
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Entry
RLO149_c042300 CDS
T01572
Name
(GenBank) putative 3'-5'-exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rli
Roseobacter litoralis
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rli03016
]
RLO149_c042300
Enzymes [BR:
rli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RLO149_c042300
Transfer RNA biogenesis [BR:
rli03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RLO149_c042300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEI96126
UniProt:
F7ZH98
LinkDB
All DBs
Position
complement(4279047..4279661)
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AA seq
204 aa
AA seq
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MTHKVYKNDLPDGLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTEA
PNLCKLLEDPNVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLL
QELLNIDISKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTREGRMETAQAC
FDFLPMRAKLDLMGWPDTDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgacccataaagtgtataagaatgatctgccggatgggctcgaccttgggccgatggtc
gcgattgattgcgaaacaatgggcctgcacccgcaccgcgaccgcttgtgtgtcgtgcaa
ctgtcaggcggggatggcaaagcgcatctgatccagatcgctaaaggccagacagaagcg
ccgaacctgtgcaaactgctggaagacccaaatgtgctcaagctgtttcatttcgggcga
tttgatatcgccgccatgctgaacgcttttggcgcgacagccgcccccgtttactgcacg
aaaatcgccagtcgtctggtgcgcacctatacagatcgtcacggtctggccaaactgctg
caggagcttttgaacatcgacatctcgaaacaacaacaatcgagcgactggggtgctgac
accctgaccgatgcgcaaatcgactatgcggcatcagacgtgctttatctgcatcaattg
cgtgaggccctgaacacgatgctgacgcgcgaaggccgcatggaaacagcgcaagcctgc
tttgactttttgccaatgcgggcaaaactggacttgatggggtggcctgacacggacatc
tttgcccactcatga
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