Roseobacter litoralis: RLO149_c042380
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Entry
RLO149_c042380 CDS
T01572
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rli
Roseobacter litoralis
Pathway
rli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RLO149_c042380 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rli03019
]
RLO149_c042380 (recQ)
03400 DNA repair and recombination proteins [BR:
rli03400
]
RLO149_c042380 (recQ)
Enzymes [BR:
rli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RLO149_c042380 (recQ)
Messenger RNA biogenesis [BR:
rli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RLO149_c042380 (recQ)
DNA repair and recombination proteins [BR:
rli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RLO149_c042380 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEI96134
UniProt:
F7ZHA6
LinkDB
All DBs
Position
4286098..4288140
Genome browser
AA seq
680 aa
AA seq
DB search
MTGAPQMLRDVFGFDAFRPGQEEIVDAVVAGENVLAIMPTGGGKSLCFQLPALLRDGVTV
VISPLIALMRDQVRALQEAGVAAGALTSGNTPEETDAVFDALDQGKLKLLYMAPERLAAG
SALGLLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALAVPLAAFTATADAETRA
EIVQKLFDDGNPQIFLGGFDRPNIHLSFAAKDGPRRQILDFAAARPGQSGIVYCGTRAKT
ESLSAALRDAGRTSLHYHGGMEAEDRRIAERRFQQEDGLIVVATVAFGMGIDKPDIRWVA
HADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRNQIDEGLAPPERRTADHARL
NALLGLAEAMKCRRATLLGYFGETEITCGKCDLCDAPPETFDGTVAVRKALSAILRTEEW
FGAGHLIDILLGVSTDKVMQRGHNSLPTFGVGKEYDKRQWQAVFRQMMGHDLVRPDPARH
GALKMTDAALPILRDQATIELRRDSIRNASTRRPAVKSMVAEEDAPLLSALKAKRRAFAE
NAKVPAYIIFTDRTLIEMAENRPRTLDDLAGIGGVGAKKLERYGAAFLEVINGEAEHMHP
NRRKLAGKTAGTVYDRLLEVQAGLTRGEAGQDKPLSCSSSQLAKLAQMHNADEKAVESLL
GDRRAERFGSAFLDVLREAG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcgcaccccagatgcttcgcgatgtctttgggtttgatgcatttcgacccggg
caggaagaaattgtcgatgcggtggttgctggcgaaaacgtgctggcgattatgccaacg
ggcggtggaaaatcgctgtgttttcaattgcctgcactgctgcgcgatggtgtcaccgtt
gtgatttcacctctcatcgcgctgatgcgcgatcaggtgcgggccctgcaagaagcaggc
gtggccgcaggggcgctgacgtccggcaatacgcccgaggaaaccgacgcggtattcgat
gcgttggatcaagggaaactcaagcttttgtacatggcgcccgagcgtctggcggcaggg
tcggcgctgggcctgctacggcgcatcggtgtatcgctcattgccgtagacgaagcgcat
tgcgtgagccaatgggggcatgacttccggcccgactatttgcgcattggtgaactgcgg
cgcgcgttggctgtgcccttggccgccttcacggcgacagcagatgcggaaacccgcgcc
gaaattgttcagaaactgtttgatgacggaaatccgcagattttccttggcgggtttgat
cgcccgaatattcatttgtctttcgcggccaaggatggccctcgacgccagattttggat
tttgcggcagcacgccccgggcagtcaggcattgtctactgtggcacacgcgcaaaaacc
gaaagcctgtctgcggccctgcgcgatgcgggtcgcacttcgttgcactatcatggtggt
atggaggcggaggatcgccggatcgcggagcgccgctttcagcaagaggacgggctgatc
gtcgtggcgacggtcgcttttggtatgggcattgataaaccggatatccgctgggtggcg
catgcggatctgccaaagtcgatcgaggcctattatcaggaaattggccgggccgggcgc
gatggcgcaccggctgaaacgctgaccctctttggaccggatgatatccgtctaaggcgc
aaccagatcgacgaagggctggcgccccccgaacgccgtactgcggatcatgcgcggctc
aatgcgttgctgggattggccgaagcgatgaaatgccgtcgcgcgacgctcttgggctac
tttggagagaccgaaatcacctgcggcaaatgcgatctctgcgatgcgccgcccgaaaca
tttgatggcaccgttgcagtgcgcaaggccctgtcggccatcctgcgcacagaggaatgg
ttcggggcggggcatctgattgatatcttgctgggcgtttcaaccgacaaagtcatgcag
cgcggccataattctctgcctactttcggcgttggtaaggaatacgacaagcgccagtgg
caagccgtcttccggcaaatgatggggcatgatctggtgcgtccggaccccgcgcgccat
ggtgcattgaagatgacggatgcagcgctgccgatcctgcgcgatcaggcgacgattgaa
ttgcggcgcgacagtattcgcaacgcaagcacgcggcgtccggcagtgaagtccatggtt
gccgaagaagacgcaccgctgctttccgcgctcaaggccaagcgtcgcgcgttcgctgag
aatgccaaggtcccggcatatattatctttaccgaccggaccctgattgaaatggctgaa
aaccgaccccggaccctcgatgatctggcaggtattggcggtgtgggggccaagaagctc
gaacgctacggcgcggcctttctcgaggtgatcaatggcgaagcggagcatatgcacccg
aaccggcgcaagctggcaggtaaaaccgcaggcacagtctacgaccgccttctcgaagtg
caggccgggttgacgcggggcgaggcgggtcaggacaagccgctgagttgttcctcgtcg
cagctggccaaactcgcgcagatgcacaacgccgacgaaaaagcggtcgagagtttactg
ggcgatcgccgtgcagaacgttttgggtcggcctttctggacgtcctgcgagaggcgggc
tag
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