Rhizobium lentis: J0663_02270
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Entry
J0663_02270 CDS
T07189
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rln
Rhizobium lentis
Pathway
rln02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J0663_02270 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rln03021
]
J0663_02270 (rpoD)
Transcription machinery [BR:
rln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J0663_02270 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Phage_DsbA
DUF4351
Motif
Other DBs
NCBI-ProteinID:
QSW94117
LinkDB
All DBs
Position
complement(444255..446312)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGGDDESEGGELAPSGGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDIIAETYKKLRKLQDQQVE
QRLAATGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVQNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKAENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaggccgccaagaag
cgcggctacgtgacgatggacgagctgaacgccgtcctgccgtccgaggaagtgacatca
gagcagatcgaagacacgatgtcgatgctgtcggacatgggcatcaacgtcatcgaagac
gaggaagccgaggaagctggtgcttccggcggcggcgatgacgacgacgccggcggcgat
gatgaaagcgagggcggcgaactcgcgccttcgggcggcaccgcgcttgcgaccgccaag
aagaaagaaccgaccgaccgtaccgacgacccggtgcgcatgtatctgcgcgagatgggc
tccgtcgagcttctctcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaagccggc
cgcgagacgatgatcgcaggcctctgtgagagcccgttgacgttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcaccacgctgctgcgcgagatcatcgatctcgaaacg
acctattccggtccggaagccaaggctgcgccgcagttccagagccccgaaaagatcgag
gcagaccgcaaggctgctgaggagaaggaaaagacccggcgcgcccgctcgggtgacgac
gacatcaccgatgtcggcggcgagggcctgcctcccgaagaggaggaagaggacgaggac
gaatccaacctgtcgctggcggcaatggaagccgagcttcgcccgcaggtcatggaaacg
ctcgacatcatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcgcctggcggctaccggcacgctgtcgtccgcccaggagcgccgctacaaggagctc
aaggacgagctgatcaaggcggtcaaatcgctgtcgctcaaccagaaccgcatcgacgcg
ctggtcgagcagctctacgacatcaacaagcgcctcgtgcagaacgaaggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgatagcttcctggaacagtatcagggcgct
gagctcgatccgaactggatgaagtcgatcggcaatctggctgcccgcggctggaaggaa
ttcgccaaggccgagaatacgacgatccgcgacatccgccaggagatccagaatctcgca
acggaaaccggcatttcgatctcggaattccgccgcatcgtgcacatggtgcagaagggt
gagcgcgaagcccgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatc
tcgatcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctcatgaaggcggtcgacaagttcgaataccgccgcggctacaagttctcg
acctatgcgacgtggtggatccgtcaggcgatcactcgctcgattgccgaccaggcccgc
acgatccgcattccggtgcatatgatcgagacgatcaacaagatcgtccgcacatcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagaactggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctggaa
accccggtgggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgccgccatccaggcgaacctgcgcgagacgaccacccgcgttctc
gcctcgctgacgccgcgcgaagagcgtgtgctgcgcatgcgcttcggcattggcatgaac
accgaccatacgctcgaagaagtcggccaacagttctcggtcacccgcgaacgtatccgc
cagatcgaggcgaaggcgctgcgcaaactcaagcatccgagccgctccagaaagctgaga
agctttttggacagctaa
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