Rhizobium lentis: J0663_08950
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Entry
J0663_08950 CDS
T07189
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rln
Rhizobium lentis
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rln03019
]
J0663_08950 (hrpB)
Enzymes [BR:
rln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J0663_08950 (hrpB)
Messenger RNA biogenesis [BR:
rln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J0663_08950 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
ResIII
AAA_30
AAA_19
Flavi_DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSW95335
LinkDB
All DBs
Position
complement(1876591..1879056)
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AA seq
821 aa
AA seq
DB search
MTISASLPELPVSHVLPAIGVALAEQKRAVLSAPPGAGKTTLVPLYLLDQVWRGDGKIIL
LEPRRLAARAAASRMASLLGEQVGGTVGYRMRLDNRISAATRIEVVTEGVFARMVLDDPE
LAGISVVIFDEFHERSLDADFGLALALDVQSALREDLRILVMSATLDVDRVADLLKEPPV
IESLGRSFPVDLRYQDRPGGERIEDAVTRAIIDAHANETGSILAFLPGQAEITRTAERLQ
GRFGPETLIAPLYGNLGQKEQDAAIRPAVKGTRKIVLATSIAETSITIDGVRIVIDSGLQ
RLPVFEASTGITRLETVRASRASADQRAGRAGRTEPGIAVRLWHQGQTAALPAFTPPQIL
SSDLSGLVLDLAHWGVQDPRSLAFVDQPPETTLREARALLGQLGALDKDGALTARGKVMR
DLALPPRLAAMVVSAGEIGHAREAAMIAVLLTEQGLGGTSLDIEERLRRFKAERGERAEA
ARRLAGRLASGLDQVGATAPALAGQLLLHAFPDRIALQRGARGRFVMANGRGAELADTER
LAGSQMLVIADLTGRAAQARILAAAEVTRGNIEAELPGEIRTDDQIFFDRQSRQVRARRA
TRLGAIVFDETPLPRPSGEAVTQTLMEGVRELGLDQLAFSKDAIQLRERIDFLHRTIGDP
WPDVSDAALLSRMEEWFAPFQGEARSLSEISPAGLSNGLMSLVPHELQRDLSRLAPTHFE
APTGQRHPIQYEGEEPVLTIRVQELFGLKQHPAIAGGRLPLLLELTSPAHRPIQTTRDLP
GFWAGSWKDVRAEMRGRYPRHPWPERPEEALPTTRAKPRGT
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgacaatcagtgcatcattgccggaacttccggtttcgcatgtcctgccggccatcggc
gtagccttggccgagcagaaacgtgccgttctttcggcgccgcccggcgcgggcaaaacg
acacttgtgccgctttacctgctcgaccaggtctggcgcggcgacggcaagatcatcttg
ctggagccgcggcggctggcggcgcgagcggcggcaagccggatggcgtcactgctcggc
gagcaggttggcggcacggtcggttatcgcatgcgcctcgacaacaggatatcggcagcg
acacggatcgaggtggtaacggaaggggtgtttgcccggatggtcctcgacgatccggag
ctggccggaatctcggtcgtgatcttcgacgaattccacgagcgttcactcgatgccgat
ttcgggctggcgctggcgctcgacgttcaatcggcgctccgcgaggatctgcgcatccta
gtgatgtcggcaacgctcgacgtcgaccgtgtggccgacctgcttaaggagccccctgtc
atcgaaagcctggggcgcagctttccggtcgatctccgttatcaggatcggccgggcggt
gagcgcatcgaagatgccgtgacgcgcgcgattatcgacgcgcacgccaacgaaaccggc
tcgatcctcgctttcctgcccggccaggctgagatcacgcggaccgcagagcggctgcag
ggacgtttcggaccggaaacgctgattgcgccgctttatggcaatctcggccagaaggag
caggatgccgcgattcgaccggcggtgaagggaacgcgcaagatcgtgcttgcgacgtcg
attgccgaaacctcgatcaccatcgacggcgtgaggatcgtgatcgacagcggattgcaa
cgcctgccggtattcgaggcgtcgaccggcatcacccggctggagacggtgcgcgcgtcg
cgggcctctgccgatcagcgggctggccgcgccgggcgaaccgaaccgggtatcgccgtc
aggctgtggcaccagggacagacggcggcactgccggccttcacgccgccgcagatcctc
tccagcgatctttccgggctggtgctcgatctcgcgcattggggtgtccaggatccgcga
tccctcgcttttgtcgatcagccgccggaaacgacgcttagggaagcgcgggcgctgctc
ggtcagcttggcgcgctcgacaaggacggggcgctgacagcgcggggcaaggtgatgcgc
gatctcgccctgccgccacggcttgcggccatggtggtctcggcgggcgaaatcggacat
gcccgggaggctgcgatgatcgccgttcttctcaccgagcaggggcttggcgggacgagc
ctcgatatcgaggagcggctgcggcgcttcaaggccgagcgcggcgaaagagccgaggcg
gcgcgacggctggcagggcggctggcgagcgggcttgaccaagttggcgcaacggcgccg
gcgcttgcgggccagctgctgctgcatgccttcccggatcgaatcgcacttcagcgcggc
gcgcgcggacgattcgtgatggccaacgggcggggggccgaactggcggacaccgagagg
ctggccggcagccagatgcttgtgatcgccgatcttaccggccgggcggcgcaggcgcgg
atcctggcggcagccgaagtgacgcgcggcaatatcgaagccgaactgcccggcgaaatc
agaaccgacgaccagatattcttcgaccggcagagccgccaggtgcgggcgcggcgggca
acccggctcggcgcaatcgtcttcgacgagacgcccttgccgcgtccttccggggaagcc
gtcactcagacgctgatggaaggcgtgcgcgaactgggactcgatcagcttgccttctcg
aaggatgccatccagctgcgtgagcggatcgatttcctccatagaacgatcggcgatccc
tggcctgacgtcagcgacgccgccctgctttcgcgaatggaggaatggttcgctcccttt
cagggggaggcccgaagcctctctgagatttccccggcagggctttcgaacgggctgatg
tcgctggtgccacacgaattgcagcgcgatcttagccggcttgccccgacgcatttcgag
gcgccgaccggccaaaggcatccgatccaatatgagggcgaggagccggtcttgacgatc
cgcgtgcaagagctgttcgggctcaagcagcacccggcgatcgccggaggccgtctgccg
ctgctcctcgaactgacatcgccggcgcaccggccgatccagacgacacgcgatctcccc
ggcttctgggccggctcatggaaggacgtacgcgccgagatgcgcgggcgctatccccgg
catccctggccggagcggccggaagaggcgttgccgacgacacgggcaaaaccacgtggt
acatga
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