Rhizobium lentis: J0663_17275
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Entry
J0663_17275 CDS
T07189
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rln
Rhizobium lentis
Pathway
rln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J0663_17275 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rln03021
]
J0663_17275 (rpoC)
03400 DNA repair and recombination proteins [BR:
rln03400
]
J0663_17275 (rpoC)
Enzymes [BR:
rln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J0663_17275 (rpoC)
Transcription machinery [BR:
rln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J0663_17275 (rpoC)
DNA repair and recombination proteins [BR:
rln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J0663_17275 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QSW92819
LinkDB
All DBs
Position
3603470..3607678
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLTEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
NKVVTLHTKIRGRFKSIGEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPATKAKIVADTENL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
ILRNSEGSLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPARGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtttgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagcttgccgctcccgtcgcccacatctggttcctcaagtcg
ctgccgtcgcgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgttctc
tacttcgaaaactacatcgtcaccgagccgggcctgaccgcgctcaaggagcatcagctc
ctgacggaagaagagtacatgctcgccgtcgacgaatatggcgaagaccagttcacggcc
atgatcggtgcagaagccatctatgagatgctcgcatcgatgaaccttgaaaagatcgcc
ggcgatctgcgctccgagcttgccgacacgacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtccggcaaccgtccggaatggatgatc
atgaaggtcgtccccgtcattccgccggacctgcgtccgctggtgccgctggacggcggc
cgtttcgcgacgtcggatctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctcatcgagcttcgcgcgcccggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtcgatgcgctgttcgacaacggccgccgtggccgtgtcatcaccggc
gccaataagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgattattccggccgttcggtcatcgttaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggctctcgagctcttcaag
ccgttcatctatgcccgcctcgatgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtttgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctactatctgtcgatcctgaaccag
aacgagccgggcgaaggcatggccttctccgatctcggcgagctgcatcacgcgctggaa
aacaaggtcgtgacactgcacaccaagatccgcggccgcttcaagtcgattggcgaggat
ggcaagccctactcgaaaatttatgagacgacgcccggccgtctgctcatcggcgaactg
ctgccgaagaacggcaaggtgcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttcgcccatgcctgccgtgccggcatttcgttcggc
aaggacgacatggtcattccggccactaaggcgaagatcgttgccgacaccgaaaacctg
gtgaaggaatacgagcagcagtacaatgacggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggcaaccgaaaaggtcgccgaagaaatgatggcccgc
attaaggcggtcgaattcgatgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgagccattccggcgcccgcggttcgccgaaccagatgcgccagctgggcggcatg
cgcggcctcatggccaagccgtcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacgcacggcgcccgcaagggtctg
gctgacaccgccttgaagaccgcgaactccggctacctgacccgccgtcttgtcgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggcaccgaaaccggcctgaccatgacc
gccatcgtcgatgccggtcaggtcgtcgcctcgctcggcgcccgtatcctcggccgcacg
gcgctcgatgacatcgatcatccggttaccggtgagcgcattgtcgatgccggcaagatg
atcctcgagcccgacgtcatcgaaatcgagaaggccggtatccagtcgatccgcatccgc
tcggcgctgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctc
gcgcgcggtacgcctgtcaacatgggcgaagctgtgggcgtcatcgccgctcagtcgatc
ggcgagccgggaacccagctgaccatgcgtaccttccaccttggcggtacggcaaccgtg
gtcgaccagtcgttcctggaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
atcctgcgaaactccgaaggcagcctcgttgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggtgtcgagcgctcctcgcagcgcgtcgcctatggttcgaagctgcat
gtggatgaaggtgacaaggtcaagcgcggccagcgtctggccgagtgggatccttatacc
cgcccgatgatgacggaagtcgccggcacggtccagttcgaggacctcgtcgacggtctc
tcggttctggaagcgaccgacgaatccaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggatgcgagcggc
aatgtcgccaagctgtcgcgtggcggtgacgcccgcttcctgctctcggtcgacgccatc
ctgtcggttgagccgggcacgaaggtctcccagggcgacgttctcgctcgttcgccgctc
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgagctgttcgaa
gcgcgccgcccgaaggaccacgccatcatcgctgagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgactacatcctcgacggtaacccggcgccgcacgacatcctggcgatcaagggc
gtagaggctctggcttcctacctcgtcaacgaaatccaggaagtctatcgtctgcagggc
gtcgtcatcaacgacaagcacatcgaggtgatcgtccgtcagatgctgcagaaggtggag
atcaccgatgcaggcgactcgacctatatcgtcggcgacaacgtcgaccggatcgagctc
gaagacgtcaacgatcatctgatcgaacagggcaagaagcccgcccgcggcgagccggtt
cttctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcctccttc
caggaaacgaccaaggtgctgacggaagctgcgattgccggcaagaccgacggcctgcag
ggcctgaaggaaaacgtcatcgtcggccgcctgatcccggccggcaccggcggcaccatg
acccagatccgccgtatcgcgacctcgcgcgacgagctgatcctcgaggagcgtcgcaag
ggcaccggcgcagctgtggccacgccgatgctgcaggatatggcagaaaaggctccggcc
gcggaataa
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integrated database retrieval system
