Rhizobium lentis: J0663_19880
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Entry
J0663_19880 CDS
T07189
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rln
Rhizobium lentis
Pathway
rln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J0663_19880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rln03400
]
J0663_19880 (mfd)
Enzymes [BR:
rln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0663_19880 (mfd)
DNA repair and recombination proteins [BR:
rln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J0663_19880 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSW93297
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All DBs
Position
4068893..4072396
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLEPLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPHDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDNISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVTDHTVREAAEERSKL
VLDYFDARLNSGQSAKGQMAQGTPYKPVTPGQLYLDSKLFAKTLEALGAIRISPFNEIEG
EARRVVNVDARQGQRWARSNAEGGGDAERINIFDVVVKHIADRRAAGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDLGSLAKGEAAAAVLNLESGFEAGELVVIGEQDILGDR
MVRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKRRLLDMADALIRIAAERLT
RHAPMLTAPDGLYDEFAARFPYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQIAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLVGSKELALTKK
EVADGKTDIVVGTHALLGAGIKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPEDYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRRDHSLF
LTRDLPTPEKRLQGAAVIMTQLAELAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggctattgccgagccgctgacgatcggc
aatgtgcctgccggcctcgaaccgctgctgcttgccgaactcgcccgaacgggagagccg
gtcgcctatgtcatgtccgacggccatcgcatggccgatctggaacagatgctcggcttc
gtcgcccccgacattccggttctcaccctgccggcctgggactgtcttccctacgaccgc
gtctcgccgagcgccgatacatcggcccgccggcttgcggcgttgggtggactgatcgcc
caccgcaagaaaccgcacgccgcgatcgtgctggtcaccgccaatgccatgctgcagaag
gtggcgccgcatgacgtcatcgaaagcctgagcttttcggcacgccccggcaaccagctg
cgcatggacgatctcgccgggcgcctggagcgcaacggcttcgaccgcgttgcgaccgtt
cgcgaagtcggcgaatatgccgtgcgcgggggcattctcgacgtcttcgtgccgggttcg
gaagagccggttcgcctcgatttcttcggtgacacgctggaatcgatccgcagcttcgat
cccgccagccagcgcaccaccggccaggtgcgctccctcgatctcaatccgatgagcgag
gtgacgctgacccccgataacataagccgcttccggaagaactacctttcggctttcggc
gcaacgacgcgcgacgacgcgctctatctcgccgtttccgaaggccggcgttaccccggc
atggagcattggctgccgctcttctacgagaagctcgataccgtcttcgattatctgagc
ggtttccggatcgtcaccgatcacacggtgcgcgaagcggcggaagagcgctccaagctc
gttctcgattatttcgatgcccgcctgaattccggccagtcggccaagggccagatggcg
cagggcacgccctacaagccggtgacgccaggccagctttatctcgacagcaagctcttc
gccaaaacgctcgaagcgctcggcgccatccgcatcagtcccttcaatgaaatcgaaggt
gaggcgaggcgggtcgtcaatgtcgacgcccgccagggtcagcgctgggcccgctcgaat
gcagagggcggcggcgatgccgagcgcatcaacatcttcgatgtcgtcgtcaagcacatc
gccgaccggcgtgccgccggcgcaaaagtgctcgtcaccgcctggaccgaaggctcactc
gaacgcctgctgcaggtgctgaacgaacatggcctggaaaaggtcaagcccgtcgaggcg
ctgaaggatctcggctcgctggcgaaaggcgaggccgctgctgcggtgctcaatctcgaa
tccggcttcgaggcgggcgagctcgtcgtcatcggcgagcaggacatcctcggcgaccgt
atggtgcgccgctccaagcgccgcaagcgcgccgccgatttcatctcggaggtcgccggc
ctcgacgagggctcgatcgtcgttcatgccgaacacggcatcggacgcttcatcgggctg
aggaccatcgaggctgcgggcgccccgcatgcctgcctcgaactgcaatatgccgacgag
gccaagctcttcctgccggtcgaaaacatcgatcttctctcgcgctacggcggcgagggc
accgatgcccagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctc
aaacggcgcctgctcgacatggccgatgcgctgatccgcattgctgccgagcggctgacg
cgccatgcgccgatgctgacggcgccggacggcctttacgacgagtttgctgcccgcttc
ccctatgacgagaccgaggaccaggacaatgccattgacgctgtgcgctccgatctcggc
gccggccggccgatggatcgtctcgtctgcggggacgtcggcttcggcaagacggaagtg
gcgctgcgcgccgctttcgttgcagcaatgaacggcgtccagatcgccgtcgtcgtgcca
acgaccttgctcgcccgccagcatttcaagaccttttccgagcgtttccgtggtctgccg
gtgcgcgtccagcaggcctcgcgcctcgttgggtcgaaggagttggcgctgaccaaaaag
gaagtggcggacggcaagaccgatatcgtcgtcggcacgcatgcgctgctcggcgccggc
atcaaattcgccaatctcggtctgctgatcatcgacgaggaacagcatttcggcgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtgcacgtgctgacgctctcggcgacg
ccgatcccgcgcacgctgcagctcgccatgaccggagtgcgcgaactgtcgctgatcacc
acgccgccggtcgatcgcatggcggtgcgaaccttcatctcgcccttcgacagcctggtc
atccgcgagacactgatgcgcgagcactatcgcggcggccagagcttctatgtctgcccg
cggcttgccgatctcgcggacgtgcatgccttcttgcagtcggatgtgccggagctgaag
gtcgccgtcgctcatggccagatgccggccggcgaactcgaagacatcatgaacgccttc
tatgaaggccgctacgacgtgctgttgtccacaaccatcgtcgaatccggtctcgatgtg
ccgacggctaacacgctgatcgtccaccgcgccgatatgttcggccttgcccaactctat
cagctgcgcggccgcgtcggccgctccaaggtgcgcgccttcgcgctcttcaccctgcct
gtcaacaaggtgctaacggcgacggccgaacgccggctgaaggtgctgcagtcgctcgac
acactcggagccggcttccagctggcaagccacgatctcgacatccgcggcgccggcaat
ctgctcggcgaggaacagtccggccatatcaaggaggtcggcttcgagctctatcagcag
atgttggaagaggcggtcgccgaggtcaagggtgtcgacgagattcacgacaccggctgg
tcgccgcaaatctccgtcggcacgacggtgatgatccccgaggattacgtgcccgacctg
catctgcgcatggcgctttaccgtcgtctcggcgaaatcacggaactgaaggagatcgac
ggcttcggcgccgagatgatcgaccgcttcgggccgatgccgatcgaagtccagcatctg
ttgaagatcgtctacatcaagtcgctctgccgcaccgctaacgtcgaaaaactcgatgct
ggcccgaagggcgtcgtcgtgcagttccgcaacaaggaattccccaatccggcaaacctc
gtcggctatatcggcaagcagggcacgatggcgaagatccgtcgcgatcacagcctgttc
ctgacccgcgacctgccgacaccggaaaaacgcctgcagggtgcggctgtcatcatgacg
caactggcggaactcgcgaaataa
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