Rhodocaloribacter litoris: GQ464_004625
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Entry
GQ464_004625 CDS
T09819
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlo
Rhodocaloribacter litoris
Pathway
rlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQ464_004625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlo03019
]
GQ464_004625
Enzymes [BR:
rlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GQ464_004625
Messenger RNA biogenesis [BR:
rlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GQ464_004625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
AAA_22
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
QXD16243
LinkDB
All DBs
Position
1099356..1100585
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AA seq
409 aa
AA seq
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MHTFKALGLTGDVLNGVISAGYTTPTPIQTEAIPVACAGRDLIGCAQTGTGKTAAFVLPL
LDRLAGPTASRRGRRPCALVLTPTRELALQVEAAIRTYGQHTRLRSLVVYGGAGLRPQIE
RLRQGTDIVVATPGRLLDLMNRGHADLSQVACLVLDEADRMLDMGFIHDIRKIVAGTPAT
RQTMLFSATMSRDVQHLARSIMKDDTATVKVGEQRNPAETVTQHACLVPNPRKMDLLVHV
LENEPVQNVLVFSRTKRRADRITRQLVRRGFSATALHANKSQNQRQRALDGFRQGRFQIL
VATDVAARGLDVDTISHVINYDTPSQVEDYIHRIGRTGRAEATGDALTFVSGDERGYLRS
IERHTSQRLPRKVYDGFTPETDREDEPTEPRRTGYHAPRSRRRRNRRRR
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcatacgttcaaagccctcgggctcaccggcgacgttctcaacggcgtcatctccgcc
gggtacaccacccccacccccatccagaccgaggccatcccggtcgcctgtgccggccgg
gacctcatcggctgcgcccagacgggcacgggcaaaacggccgcctttgtccttcccctg
ctcgaccggctggccgggcccacggcgtcccgccggggccgtcgcccctgcgccctcgtc
ctcacgccgacgcgtgagctggccctgcaggtcgaggccgccatccgcacctacgggcaa
cacacccggctccgcagcctggtcgtctacggcggcgccggcctgcgaccccagatcgaa
cgcctgcggcagggcacggacatcgtcgtcgccacgccgggccgcctgctcgacctcatg
aaccgggggcacgccgacctgtcgcaggtagcctgcctcgtccttgacgaagccgaccgc
atgctcgacatgggcttcatccacgacatccgcaagatcgtcgccggaacgcctgctacg
cgccagacgatgctgttttcggcgaccatgtcccgcgacgtgcagcaccttgcccgcagc
atcatgaaggacgacaccgccacggtgaaggtcggcgaacagcgcaacccggccgaaacg
gtcacccagcatgcctgcctggtgccgaacccacggaagatggacctgctcgtccatgtg
ctggagaacgaacccgtgcagaacgtgctcgtcttctcccgcaccaagcgccgggcggac
cgcatcacccgccagctcgtccggcggggcttctcggccacggcactccacgcgaacaag
tcgcagaaccagcgacaacgcgccctcgacgggttcagacaggggcgattccagatcctg
gtggccaccgacgtcgccgcccggggcctcgacgtcgacacgatctcgcacgtgatcaac
tacgacacccccagccaggtcgaggactacatccaccgcatcggccgcacgggccgggcc
gaggccaccggcgacgccctcaccttcgtatccggcgacgaacggggctatctccgaagc
atcgagcggcacacgtcgcagcgcctgccccgcaaggtgtacgacggcttcacaccggag
acggaccgggaggatgagccgaccgaaccacgccggacgggctaccatgccccgcggagc
cggagacggagaaaccggcgccgacgatga
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