Rhodocaloribacter litoris: GQ464_007700
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Entry
GQ464_007700 CDS
T09819
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
rlo
Rhodocaloribacter litoris
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rlo01011
]
GQ464_007700
Enzymes [BR:
rlo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
GQ464_007700
Peptidoglycan biosynthesis and degradation proteins [BR:
rlo01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
GQ464_007700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_RLK
NMB0315_dom_I
HTH_28
HTH_23
DUF3071
DUF1612
DUF6707
PaREP1
Motif
Other DBs
NCBI-ProteinID:
QXD16811
LinkDB
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Position
complement(1877080..1879101)
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AA seq
673 aa
AA seq
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MLFALSDTLSEAQILHRLARIYGYQSDLLRAQAEGDLERTESLLSTAMTELAALLRHPGI
LERPRFQELYRTLVAEYERYYGPTDTLTLPYGSIFELRAEVFALLNELDEPLLEDVVIPN
LRPIEAVIPMTMNRLVESSIAYLRREPDRHIHQWLSRAETYFPMIEQILAEEGVPDELKY
LAMIESGLNPRARSWAQAVGMWQFIAATGRAYGLHVDAWVDERMDPEKATRAAARHLRDL
YREYGDWHIALAAYNCSPRCIRRAMRQAEERTGRKPTFWDMYPYLPRETRNYVPMFIATA
LMASNPDAFGLKPAQPGPRYAYHYVPVQGAIRLSTLAELAGTDVNLLRALNPELRRNSLP
PSTEPYYLRLPLGTYERFAEGYKNLPEDAFLTAGEYVVRRGDTLGKIAAQYGTSVRQLMA
DNGLKTTRIHIGQRLVVPVPQYQSDLPRPELAEADVVTVDYGTYALRPLTTASGTLARAT
TSRPVQTTPIVKTSAPAPAPAREKSVEEKPAGPTRIVYTVRRGDTLIEIADRYNVWVADL
KRWNNLRGNTIRVGQRLSIYTANPPADEPEPDRPEKITYRVRSGDTLSEIAARYGVSIRQ
LQQWNDLRGTRIRTGQRLTIYPGGSGPVTHRVQRGDTLDEIARRYGVSISDLKQWNNLRG
STIYPGQELTVQR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcgcgctttcggacaccctgtccgaggcccagatcttgcaccggctcgcacgg
atctacgggtaccagtcggatctgctgcgggcccaggccgaaggcgacctcgagcggacc
gagtcgctgctctcgacggccatgaccgaactggccgcgctgttgcggcatcccggcatt
ctggaacgcccgcgctttcaggagctctaccgcacgctcgtggccgagtatgagcggtac
tacggtcccacggacacgctgaccctgccctacggcagcatcttcgagctccgtgccgag
gtgttcgccctgctcaacgagctggacgagccgctcctggaagacgttgtcatcccgaac
ctgcgcccgatcgaggccgtcattccgatgacgatgaaccggctcgtcgaatcctccatc
gcctacctgcgccgggagccggaccggcacatccaccagtggctcagccgggccgagacg
tatttcccgatgatcgaacagatcctggccgaagaaggcgtgcccgacgagttgaaatac
ctggcgatgatcgagagcgggctcaacccgcgggcgcggagctgggcgcaggccgtgggc
atgtggcagttcatcgcggccaccgggcgcgcctacggcctccacgtcgatgcctgggtg
gatgagcggatggacccggagaaggccacccgggccgccgcccgccacctgcgcgacctc
taccgggagtacggcgactggcacattgcgctggccgcctacaactgtagcccgcgctgc
atcagacgggccatgcggcaggccgaggaacggaccgggcgaaaacccaccttctgggac
atgtacccctacctgcctcgcgagacgcgcaactacgtgccgatgttcatcgcgacggcc
ctcatggcctccaacccggatgcgttcgggctgaaaccggcacaaccgggcccgcgctat
gcctatcactacgtgccggtgcagggcgccatccgcctgagtaccctggccgagctggcc
ggcaccgacgtcaacctgctgcgggccctcaacccggaactgcgccgcaacagcctgccc
ccctcgaccgagccctactacctccgccttcccctcggcacgtacgagcgcttcgccgaa
ggctacaaaaacctgccggaggatgccttcctgacggccggggaatacgtggtccgccgc
ggcgacacgctcggcaagatcgccgcccagtatggcacgagcgtgcgccagctcatggcg
gacaatggcctgaagaccacgcgcatccacatcgggcaacgcctggtggtgccggtgccg
cagtaccagagcgacctgccccggccggaactggccgaggcggacgtcgtgacggtcgac
tacggcacgtatgcgcttcgccccctcacaaccgccagcggaaccctcgcccgggcaacg
acctcccggccggtgcagaccacgcccatcgtgaagaccagcgcaccggcccctgcaccc
gcacgcgaaaaaagcgtcgaggagaaacccgctggcccgacgcgcatcgtctacaccgtg
cgccggggggacaccctcatcgaaatcgcggaccggtacaacgtctgggtggccgacctg
aagcggtggaacaacctgcgcggcaacaccatccgcgtcggccagcggctgtcgatctac
acggccaacccgccggcggacgagcccgagcccgacaggccggagaagatcacctaccgc
gtgcgcagcggcgacaccctgagcgaaatcgccgcccggtatggcgtctcgatacgccag
ctccagcaatggaacgacctgcgcggcacccgcattcgcaccggccagcgcctgaccatc
taccccggcggctccggcccggtgacccaccgcgtccagcgcggcgacacgctcgacgag
atcgcccgccgctacggcgtctccatcagcgacctgaagcagtggaacaacctgcgcggc
agcaccatctatcccggccaggaactgaccgtgcagcgctga
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