Rhodocaloribacter litoris: GQ464_008515
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Entry
GQ464_008515 CDS
T09819
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
rlo
Rhodocaloribacter litoris
Pathway
rlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GQ464_008515 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlo03400
]
GQ464_008515 (uvrA)
DNA repair and recombination proteins [BR:
rlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GQ464_008515 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GQ464_008515 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_16
AAA_29
AAA_21
nSTAND3
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_23
DUF4350
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QXD16961
LinkDB
All DBs
Position
2063260..2066223
Genome browser
AA seq
987 aa
AA seq
DB search
MDERIIIRGAREHNLKNIDLDIPRNRLVVITGLSGSGKSSLAFDTIYAEGQRRYMESLSA
YARQFLGMMERPDVDFIDGLSPVIAIEQKTVSRNPRSTVGTVTEIYDFLRLLFARAGTAY
SYLTGNPMRKQSDDEIIDGILGLPEGTRVVLLAPVVKGRKGHYRELFEQIARQGFERVRI
DGELREITPGMKIDRYKTHDIEVVVDRLVIREGLRPRVSQSVETALGMGGGTLIAAVLGA
DGTLTDHVFSRHLFDPESGLSYDEPSPNTFSFNSPYGACPECNGLGTRREIDPALVLPDP
SKSIAEGGLAPLGKPRDTWFFSQLRAVAETLGFDFDTPLERLDPAHLEVVLEGAGDRQFD
IVYRYKGREVKYQHRFGGVYGHLRHAYEQSTGPGQRKWAEAYMRLLPCRACGGARLKPEA
LAYRIGGKNIAELVQMDLVSLRRFFDEVAFTDRQALIARPIVKEIRERLDFMLNVGVGYL
NLDRPARTLSGGESQRIRLATQIGTQLTGVLYVLDEPSIGLHPRDNRRLIEALMQLRDLG
NSVLVVEHDREMIEAADFVVDLGPGAGEHGGHVLGAAPPERLPAGTDGRRSLTTAYLRGE
KHIPVPKTRRTGNGKTLTLHGATGHNLKGDPLVLPLGTFICVTGVSGSGKSSLINQTLYP
ALANHFHNARHVPLPFERIEGLEHIDKVIDIDQSPIGRTPRSNPATYTGLFTHIRDLFAQ
LPEAKIRGYKPGRFSFNVKGGRCETCQGAGIVKLEMNFLPDVYVACETCRGRRYNAETLE
VHYKGKSIADVLEMTVEEALAFFESVPRIARKLRTLDSVGLGYIRLGQQATTLSGGEAQR
VKLARELSRPGTGATLYILDEPTTGLHFEDIRHLLHVLQALVKKGNTVLVIEHNMDVVKV
ADHVIDLGPEGGDAGGRILFAGTPEALAATDTHTGRHLRDELARDARLTDDEDEDDVDLD
ALAGDDDEPDTDEVIEDEEEAAGETVG
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggacgaacgcatcatcatccgcggcgcgcgcgagcacaacctcaagaacatcgacctg
gacattcccaggaaccggctcgtcgtcatcacggggctgagcgggtcgggcaagagcagc
ctggccttcgacaccatctacgccgaggggcagcggcgctacatggagagcctctccgcc
tacgcgcgccagttcctgggcatgatggagcgcccggatgtggacttcatcgacggcctc
agccccgtcatcgccatcgagcagaagaccgtcagccgcaacccgcgctccaccgtcggc
accgtcaccgagatctacgacttcctgcgcctgctcttcgcccgcgccggcacggcctac
tcgtacctgacaggcaaccccatgcggaagcagtcggacgacgagatcatcgacggcatc
ctgggcctgcccgaggggacgcgcgtggtgctgctggcgcccgtggtgaagggccgcaag
ggacactaccgcgagctcttcgagcagatcgcccggcagggcttcgagcgcgtccgcatc
gacggcgagctgcgcgagatcacgccggggatgaagatcgaccgctacaagacgcacgac
atcgaggtggtggtggaccggctcgtgatccgggaggggctgcggccgcgcgtgagccag
tccgtcgagacggcgctggggatgggcggcggcacgctgattgccgccgtgctgggcgcc
gacggcacgctgaccgaccacgtcttcagccgccacctgttcgaccccgagagcggcctc
tcctacgacgagccctccccgaacaccttctccttcaactcgccctacggcgcctgcccg
gagtgcaacgggctgggcacgcgccgcgagatcgacccggcgctggtcctcccggacccc
tcgaaaagcatcgccgagggggggctggcgccgctgggcaagccccgcgacacgtggttc
ttcagccagctccgcgccgtcgccgagacgctgggcttcgacttcgacacgcccctggag
cggctggacccggcccatctcgaggtcgtcctcgaaggcgcgggcgaccggcagttcgac
atcgtctaccggtacaaggggcgtgaggtgaagtaccagcaccggttcgggggcgtctac
gggcacctgcggcacgcctacgagcagagcacggggccggggcagcgcaagtgggccgag
gcgtacatgcgcctgctgccctgccgcgcctgcggcggcgcccgcctcaagcccgaggcg
ctggcctaccgcatcggcgggaagaacatcgccgagctggtgcagatggacctcgtctcg
ctccgccgcttcttcgacgaggtcgccttcaccgaccggcaggccctcatcgcccggccc
atcgtcaaagagatccgcgagcggctcgacttcatgctgaacgtgggcgtgggctacctc
aacctggaccgtccggcgcggaccctctccggcggcgagagccagcgcatccgcctggcc
acccagatcggcacccagctcacgggcgtcctctacgtgctcgacgagccctccatcggc
ctgcacccgcgcgacaaccgccgcctcatcgaggcgctgatgcagctgcgcgacctgggc
aactcggtcctggtcgtcgagcacgaccgcgagatgatcgaggcggcggacttcgtggtg
gacctgggcccgggcgccggcgagcacggcggccatgtgctcggcgccgccccgccggag
cgcctccccgccgggacggacggccgccggagcctcaccacggcctacctccggggcgag
aagcacatccccgtcccgaagacgcggcgcacaggcaacgggaagacgctcacgctccac
ggcgccaccggccacaacctcaagggcgacccgctcgtgctcccgctgggcaccttcatc
tgcgtcaccggcgtctccggctcgggcaagtccagcctgatcaaccagacgctctacccc
gccctggccaaccacttccacaacgcccgccacgtgccgctgcccttcgagcggatcgag
gggctggagcacatcgacaaggtcatcgacatcgaccagagccccatcggccgcacgccc
cgctcgaaccccgccacgtacaccggcctcttcacccacatccgcgacctcttcgcccag
ctccccgaggcgaagatccggggctacaagcccggccgcttctcgttcaacgtgaagggc
gggcggtgcgagacgtgccagggcgcgggcatcgtcaagctggagatgaacttcctgccg
gatgtgtacgtggcgtgcgagacgtgccggggccgccgctacaacgccgagacgctggag
gtgcactacaagggcaagagcatcgccgacgtgctggagatgaccgtagaggaggcgctg
gcgttcttcgagagcgtgccgcgcatcgcccggaagctgcgcacgctcgactcggtgggc
ctcggctacatccgcctggggcagcaggccaccaccctctcgggcggcgaggcgcagcgc
gtcaagctggcccgcgagctctcccgccccggcactggcgcgacgctctacatcctcgac
gagcccaccaccggcctccacttcgaagacatccgccacctgctgcacgtcctgcaggcc
ctcgtcaagaagggcaacacggtgctggtcatcgaacacaacatggacgtcgtcaaggtg
gccgaccacgtcatcgacctcggtcccgagggcggcgacgccggcggtcggatcctcttc
gccggcacgcccgaggcgctggccgccaccgacacgcacaccggccgccacctccgcgac
gagctggcccgcgacgcccgcctcaccgacgacgaggacgaggacgacgtggacctggac
gccctcgccggagacgacgacgaacccgacaccgacgaggtgatcgaggacgaggaggaa
gcggcgggcgagacggtggggtga
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