Rhodocaloribacter litoris: GQ464_009635
Help
Entry
GQ464_009635 CDS
T09819
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rlo
Rhodocaloribacter litoris
Pathway
rlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQ464_009635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlo03019
]
GQ464_009635
03009 Ribosome biogenesis [BR:
rlo03009
]
GQ464_009635
Enzymes [BR:
rlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GQ464_009635
Messenger RNA biogenesis [BR:
rlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GQ464_009635
Ribosome biogenesis [BR:
rlo03009
]
Prokaryotic type
rRNA helicases
GQ464_009635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PaaA2
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QXD13735
LinkDB
All DBs
Position
complement(2315676..2317244)
Genome browser
AA seq
522 aa
AA seq
DB search
MPEEPNQGSPFTRVIDLTTRAQEAARQAKVQASLVEPDPPLPGATLETLPPAVRRAVENA
GWDRLMPVQEKAIPYMLDGRDLIVQSRTGSGKTGAFLLPLFTLLDPEKRAAQALILTPTR
ELARQIHEEFVRMRGDAPEGLSAALVYGGVRYGPQNRALQDGAQIVIGTPGRILDHLERA
TFRLDALRVLILDEADEMLSMGFYPAMRQLKRYLPARRQSYMFSATMPPKVRALAREFLR
EPGFLSLSAGHESVDAIEHRYYKVDPMEKDRALVRLIELENPDSAIIFANTKRDVEYLAQ
FLTNYGYDAAGLTGDLPQRARERIMDRIRKGQLRFLVATDVAARGIDISDLSHVIIYDVP
QDQEIYIHRTGRTARAGKTGTALVLTTFEDERTLLAIAHRYAIDIEKRPLPGPEDVARRV
AERMTVVLEDRYRDKTNLARERLQRFVPLVEELAEEEPELLAMLVDDLYHELMHRAPEQP
EITAEEAARREAADAEDAEMAERKKRRGRGKRRGGRKRGRGD
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaagaaccgaaccagggaagtccctttacccgtgtcatcgacctgactacccgg
gcccaggaggcggcccggcaggcgaaggtgcaggcctcgctcgtcgagcccgacccgccg
ctgccgggtgccacgctcgagacgctgccgccggcggtgcgccgcgccgtcgagaacgcc
ggctgggaccggctgatgcccgtccaggagaaggccatcccgtacatgctcgacggccgc
gacctgatcgtgcagtcgcgtaccggctcgggcaagaccggcgccttcctccttcccctc
tttaccctgctcgaccccgagaagcgcgccgcgcaggccctcatcctgacgcccacccgc
gagctggcccgtcagatccacgaggagttcgtgcggatgcggggggacgcgccggaaggc
ctctcggccgcactcgtctacggcggcgtgcggtacgggccgcagaaccgggccctgcag
gacggcgcccagatcgtcatcggcacgcccggccgcatcctcgaccacctcgagcgcgcc
accttccgcctggacgccctccgggtgctcatcctcgacgaggccgacgagatgctttcg
atgggcttctacccggccatgcgccagctcaaacgctacctgcccgcccgccggcagtcg
tacatgttcagcgccaccatgccgccgaaggtgcgcgccctggcccgcgagttcctccgc
gagcccggctttctctcgctcagcgccggccatgagagcgtcgacgccatcgagcatcgc
tactacaaggtcgatccgatggagaaggaccgggcgctcgtgcgactgatcgagctggag
aacccggactcggccatcatcttcgccaacacgaagcgggacgtcgagtacctggcccag
ttcctgacgaactacggctacgacgccgccggcctgacgggcgacctgccgcaacgggcc
cgtgagcgcatcatggaccgcatccgcaaagggcagctccgcttcctcgtcgccaccgac
gtggccgcccgcggcatcgacatctcggacctgagccacgtcatcatctacgacgtgccg
caggaccaggagatctacatccaccgtaccgggcgcacggcccgcgccggcaaaacgggg
acggccctcgtgctgaccacgttcgaggacgaacggacgctgctggccatcgcgcaccgg
tacgccatcgacatcgagaagcgcccgctgccgggcccggaggacgttgcccgccgtgtg
gccgagcgcatgaccgtggtgctcgaggaccgctaccgggacaagaccaacctggcgcgc
gagcggctccagcgcttcgtgcccctcgtcgaggagctggccgaggaggagcccgagctg
ctggcgatgctggtggacgacctctaccacgagctgatgcaccgggcccccgaacagccc
gagatcacggccgaggaggcggctcgccgcgaggccgccgacgccgaagacgccgagatg
gccgagcgcaagaagcggcgcggccggggcaaacgccggggcggccgtaaacgcggtcgc
ggcgactga
DBGET
integrated database retrieval system
