Rhodocaloribacter litoris: GQ464_010960
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Entry
GQ464_010960 CDS
T09819
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rlo
Rhodocaloribacter litoris
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rlo03009
]
GQ464_010960 (rlmD)
Enzymes [BR:
rlo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GQ464_010960 (rlmD)
Ribosome biogenesis [BR:
rlo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GQ464_010960 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltransf_15
Methyltransf_11
RrnaAD
N6_N4_Mtase
PrmA
Cons_hypoth95
TRM5-TYW2_MTfase
UPF0020
FtsJ
TPMT
Methyltransf_4
Methyltransf_12
PCMT
Methyltrans_SAM
DOT1
DUF5021
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QXD13978
LinkDB
All DBs
Position
2630694..2632100
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AA seq
468 aa
AA seq
DB search
MKKGTEIVLDIEKFADRGKSLARVDGYVVFVPGAVPGDRVRAAVIKRKKNYAEARLREVL
VPSPLRTEPRCRYFGTCGGCKWQHVAYAAQCEAKRQSVADAFVHHGGFEAVEVRPTLGAD
PIYGYRNKMEFSFSAERWLTPEEIASGEDFDTGFALGLHVPGNFHKVLDLTECHLPPEIS
VRLLSGVRAFVREQGWKPWDIRRHEGYLRHLVLRTGTHTGEVMVNLVTNGWAPPRMERMA
AYLQEHFPEVTTFVNTINTGPAQTAFGEAIHTLYGPGVIHDRIGPYTFEIAPNAFFQTNT
RQAERLYEVARDFAGLRPQDLVYDLYCGAGTISIFVAERARHVVGVELVEEAVANARANA
AANGVTNCTFVSGDLMRLFTPAFVRKHGAPDVLIADPPRAGMHPKVVEQIGRLRPERFVY
VSCNPLTQARDLALLRDVYEIEVVQPVDLFPHTHHIESVAKLRRRTRP
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaaggcaccgaaatcgtcctcgacatcgaaaagttcgccgaccggggcaaatcg
ctcgcccgcgtcgacggctacgtcgtctttgtgcccggcgccgtgccgggggaccgtgtg
cgggcggccgtcatcaagcggaagaagaactacgccgaggcccgcctgcgcgaggtgctc
gtgccgagcccgctgcgcaccgagccccgctgccggtacttcggcacgtgcggcggctgc
aaatggcagcacgtcgcctacgcggcgcagtgcgaggccaagcggcagagcgtggccgac
gccttcgtgcaccacggcggcttcgaggccgtcgaggtgcgccccaccctgggcgccgat
ccgatctacggttaccgcaacaagatggagttctccttcagcgccgagcggtggctcacg
cccgaggagatcgcctccggcgaggacttcgacaccggcttcgcgctggggctccacgtg
cccggcaacttccacaaggtgctcgacctgacggagtgccacctgccgcccgagatcagc
gtacggttgctgagcggcgtgcgcgccttcgtccgcgagcagggctggaagccgtgggac
atccgccgccacgaagggtacctccgccacctggtcctccgcacgggcacccatacgggc
gaggtgatggtcaacctggtcaccaacggatgggccccgccgcgcatggagcgcatggcc
gcctacctgcaggagcacttccccgaagtcaccacgttcgtcaacaccatcaacaccggc
ccggcgcagaccgccttcggcgaggccatccacaccctctacggtcccggcgtcatccac
gaccgcatcggcccctacacgttcgagatcgccccgaacgcctttttccagacgaacacg
cggcaggccgagcggctctacgaggtggctcgcgacttcgccgggctgcggccgcaggac
ctggtctacgacctctactgcggcgccgggacgatctccatcttcgtggcggagcgggcg
cggcacgtcgtgggcgtcgagctggtcgaggaggccgtcgccaacgcgcgggccaacgcc
gccgccaacggcgtcacgaactgcaccttcgtcagcggcgacctgatgcggctcttcacc
ccggcgttcgtccgcaagcacggtgccccggacgtcctcatcgccgacccgccgcgggcc
ggcatgcacccgaaggtcgtcgagcagatcggccgcctgcggccggagcgcttcgtctac
gtgagctgcaacccgctcacgcaggcccgcgacctggccctgctccgcgacgtctacgag
atcgaggtcgtccagcccgtcgacctgttcccccacacccatcacatcgagagcgtggcg
aagctgcgccgtcgcacccggccctga
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