Ruminococcus lactaris: NQ541_00880
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Entry
NQ541_00880 CDS
T08757
Name
(GenBank) discoidin domain-containing protein
Organism
rlr
Ruminococcus lactaris
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
F5_F8_type_C
F5_F8_type_C_2
Glyco_hydro_20
Glyco_hydro_20b
Flg_new
Flg_new_2
fn3
Collagen
CBM_AftD
DUF5000
Motif
Other DBs
NCBI-ProteinID:
UWP65720
LinkDB
All DBs
Position
174407..179212
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AA seq
1601 aa
AA seq
DB search
MKLKTVKRMNACVLSAAMVLSGVTIIPPATVSAAANNEINYALSGTATVSDQETNYWGAD
KAIDGIVNRDAAKADQSRWATNQSTSQAARTLTVNLGTQKTFDHFVIEWERTNITNFKIS
VCDTEDGEYRDVYVKNDGENITSVTSDIQLDEAVTAQYVKLTVNGYTVNPGSWQSVSLYE
FEILGEAENLSTAATATADGSETTGTDASKAVDGDDTTRWASPAATGSHWLKLDYGSEKT
IRTAKIHWERKNATAYRIEKSSDGENWETVKAFTASPSDYRETIVFDEAVTTRYLRLYIE
SFDQAGAPEGSASVSWPTVSVYEFETYEAELATTEPERTPKEVADGLEVPSSIDGASGKL
AMPEVPEGYEISFVGADYEQIVDRDLTVYQPLVTKTVKMNFNVKKAGDDSTAVDSKEYTM
TVTGKYTAEDGDNAKPNVIPELAEWKGAKGGSFEISDSSRIVVATKDKAELSAMAEEFKN
DYKEITGKSIEIVYADQASAGDFFFTLEAAGNGLKEEGYSMNVTDKVEVKAEQKAGAYWS
TRTILQILKQNGTTIPKGECRDYPKYEVRGFMLDVGRRPFESETLQEVAKTMLWYKMNDL
QLHLNDNYIFLENYSTSEGAMSAYEGFRMESDVKEGGLNQADLTSDDMYYTKAEMKSMIQ
NYRKLGLDIIPEFDTPAHSLSFTKVRPDLRFGTTGRQNDHFNLSTKYDESLAFIESIWDE
YIKGDDPVFDQDTTVNIGTDEYDGQYTEQFRKFTDDLLAYIQDNGNTVRLWGSLTARNGS
TSVRSEGVQMNIWNDGWANPKSMYQQGYDLIDMNDGSVYIVPAAGYYADYLSRKSMYNYD
PATRMGVPSGSEQTLGGAYAIWNDMVDQRANGLTEMEIYDRFDDAAPYYAAALWGKSGEV
SFTTAQQTSENVGEAPGVNAYDKVDSETDEILSYDFEDGLSDKSANEYDAENGKNAEVKD
GELVLKGGESYISTPLDKVGPEKELSFDITLTQPAEPGQILFEAEKDEDHEAYSTHNIRI
MEDGTLGFTREGYDYSFGYKLPVNQKMTLKIRTKNGSTVLIADGKEYKATGSFTYEGDVK
KTGITSSTLSLPLTRIGSDTNAVHAIIDNVNLSSTMSDGESSPIDPSGFTVTSDNQNSDG
PISAAFDNDRSTIWHTQYSPSKKALPATITIDMGQSYDVNGFYYLPRPTGNNGYILKYSL
YYEDADENWTALVENGTWESTGTEKTVNFTPVQTSKIKLVVSEGQNGFGSAAEFRVLTGT
QDLTKTQLRMSTYVEGEGTATVSKEKIEQGEEVTFTATAKKGATFTGWYDVLGTKVSDEA
VYTVTPEENLTLIAKFEKGSEPDQPEDKTYTVTIDGKEQTVKEGEKAAKPADPEKEGYKF
LGWYEEGSDTAFDFDTAITKNITLTARFEKIEEPDQPDKPSAPENVVTGEITKNSVEVKW
DGPASTAGLAGYKIYVNGKEYVTYIPADATGYTIEGLEAGKTYQIEVVAVGDDENATEYA
AAELSVTTKSENNGNGGDNGNTGDNGNNGNNGNAGDNGNNGNNGNAGVNNPTKDQNHNAG
TTNKKQNAAAKTGDSTNMAVFVFMLGGSLAAGTVVFRRKRR
NT seq
4806 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaagacagtaaagcgtatgaatgcgtgcgttttatctgctgccatggttttg
agtggtgttacaatcattccaccggccacagtaagtgctgcggcaaataatgagatcaat
tatgcattaagtggaacggcaaccgtcagtgatcaggagacgaattactggggagcagat
aaggcgatcgacggaatcgtcaacagagatgctgcaaaggcagatcagtcgagatgggca
acgaatcagagtacaagtcaggcggcaaggacgctgacggtgaatctcggtacacagaag
acatttgatcattttgtgatcgaatgggaaagaacgaatattacgaacttcaagatttct
gtatgtgatacagaagatggagaataccgggatgtttacgtaaaaaatgacggagaaaat
attacatcagttacgagtgatatccagttggatgaggctgtgacggctcagtacgtaaag
ctgacagtcaatggttatacagtaaatccgggaagctggcagtcagtatccctgtatgag
tttgagatccttggagaagcagagaatttgagtaccgctgcaactgcaacagcagacgga
agtgagacaaccggaacagatgcctccaaggcagttgacggcgatgatacgacccgctgg
gcaagtccggcggcaacaggatcacactggctgaagctggattatggcagcgagaagacg
atcagaacagcaaagatccattgggagagaaagaatgcgactgcctaccggatcgagaag
tcttccgacggagagaactgggagacggtaaaagcatttacggcaagtccttcagattat
agagagacgatcgtatttgatgaagcagtaacgacaagatatctgagattatatattgaa
tcctttgatcaggcgggagcaccggagggaagtgcttctgtaagctggccgaccgtttca
gtctatgagtttgaaacttatgaggcagagcttgctacgacagagccggagagaactccg
aaagaagttgcagacggcctggaagttccttccagtattgatggagcatcaggaaagctg
gcaatgccggaagttcctgaaggatatgagatcagttttgtcggtgcagattatgagcag
atcgtagacagggatctgacagtttatcagccgcttgttacaaagactgtgaagatgaac
ttcaatgtaaagaaagccggtgacgacagtacggcagtagattccaaagaatatactatg
actgtaaccggaaagtatacggcagaagacggagataatgcaaagccgaacgtaatcccg
gaactggcagaatggaaaggtgcaaagggtggttcctttgagatcagtgattccagccgt
atcgttgtagcaacaaaggataaggcagaattatctgcaatggctgaagaatttaagaac
gattataaagagatcacgggaaaatccatcgagattgtttatgcggatcaggcatcagca
ggagacttcttctttacacttgaggcagccggaaatgggctgaaagaagaaggatattcc
atgaatgtaacggataaagtggaagtgaaggcagagcagaaagcaggagcttactggtct
acaagaacaatccttcagatcctgaagcagaatggtacgacaatcccgaagggcgaatgc
agggattatccaaagtatgaagtcagaggctttatgctggatgtaggaagaagaccgttt
gaaagcgagacacttcaggaagttgcaaagacaatgctgtggtataagatgaatgacctg
cagcttcatctgaacgataactatattttccttgaaaattattcaacctcagagggtgca
atgtcagcttatgagggattccgtatggagtctgatgtcaaagagggtggattgaatcag
gcagacctgaccagtgacgatatgtattataccaaggctgagatgaagtccatgatccag
aattaccggaagttaggactggatattatcccggaatttgatactcctgcacattctctg
tcatttacaaaggtaagaccggatctcagattcggaacgacaggacgccagaatgatcat
ttcaacctcagcacgaagtacgatgagtcactggcatttattgagagcatctgggatgag
tatattaagggtgatgatccggtatttgaccaggatactacagtgaatatcggaacagat
gagtatgatggacagtatacagagcagttccgtaagtttacagatgaccttctggcttat
atccaggataatggaaatactgttcgtctgtggggaagtcttacagcaagaaacggaagc
acatctgtaagaagtgaaggtgttcagatgaacatctggaacgatggatgggcaaatccg
aaatccatgtatcagcagggttatgatctgatcgatatgaatgacggaagtgtatatatc
gtaccggcagcaggatattacgctgattatctgagccgcaagtccatgtataattatgat
ccggctacacgtatgggtgttccgtcaggttctgaacagacactgggaggagcttatgcg
atctggaacgatatggttgatcagagagcgaacggactgactgagatggagatctatgat
cgcttcgatgatgctgcaccatattatgcggctgcattgtggggcaaatcaggagaagtt
tcttttacaacagcacagcagacgagcgagaatgtgggtgaagctccaggagtcaatgca
tatgataaagtagacagtgagacagatgagattctttcctatgattttgaggatggactt
tcagataagagtgcaaatgaatatgatgcagagaacggaaagaatgcggaagtgaaggat
ggagaacttgttctgaagggcggagaaagctatatctctactccattggataaagttgga
cctgagaaagaactgagctttgatatcacactgactcagccggcagaaccgggacagatt
ctctttgaagctgagaaggacgaagatcatgaagcctacagtactcataatatccgcatt
atggaagatggaacacttggatttacaagagaaggatatgactattcctttggatataaa
cttcctgttaatcagaagatgacattaaagatccgtacaaagaacggaagtactgtcctg
attgcagatggaaaagagtataaagcaaccggaagttttacatatgaaggcgatgtgaag
aagaccggtattacaagctctacactttctctgccactgacaaggattggttctgataca
aatgcggtacatgccatcattgataatgtaaatctttcttctacgatgtcagatggggaa
tcttcgccgattgatccatccggatttacagtgacatcagataatcagaacagtgacgga
ccaatcagtgcagcatttgacaatgatcggtcaacgatctggcatacgcagtactctccg
agtaagaaagcactgccggcaacgatcacgattgatatgggacagtcctatgatgtgaac
ggattctattatctgccgagaccgacgggaaataacggatatatcctgaaatattctctg
tattatgaggatgcggatgaaaactggacagctcttgtagagaatggaacgtgggaaagc
acaggtacagaaaaaacggtaaactttacaccggttcagacatccaagatcaagctggtt
gtatcagaaggacagaatggtttcggtagtgcagcagaattcagagtgcttacaggaacg
caggatcttacaaagacacaactccgtatgagtacttatgtagaaggagaaggtacagcg
actgtttctaaagaaaagatcgaacagggagaagaagttacctttactgcaacagcaaag
aaaggtgctacatttaccggatggtatgatgtccttggaacaaaggtaagtgatgaagcc
gtttatacagtaactccggaagagaacctgaccctgatcgcaaaatttgaaaaaggaagc
gagccggatcagccggaagataagacctatacggttacgatcgacggaaaagaacagacc
gtcaaagaaggagaaaaggctgcgaagccagccgatccggaaaaagagggttataagttc
cttggctggtatgaagaaggaagtgatacggcgttcgatttcgatacagccatcacgaag
aatattacactgactgcaagattcgagaaaatagaagagccggatcagccggacaaacct
tcagcaccggagaatgtagtgacaggtgaaattacgaaaaattccgttgaagtgaaatgg
gatggaccggcaagcacagcaggactggcaggttacaagatctatgtaaatggaaaagaa
tacgtgacgtatatcccggcagatgctacaggatatacgatagaaggtcttgaagccggt
aagacttatcagatcgaagttgttgccgtaggcgatgatgagaatgcaacagagtatgca
gccgcagaactgagtgtaacaacaaagagtgaaaataatggtaacggcggcgataacgga
aataccggagacaacggtaataatggcaataacggaaatgccggagacaacggtaataat
ggcaataacggaaatgccggtgtaaataatccgactaaggatcagaatcataatgccgga
acaacaaataagaagcaaaatgcagcagccaagacaggcgacagcacaaatatggcagta
tttgtattcatgcttggtggttcgctggcagccggaacggttgtcttcagaaggaaaaga
agataa
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integrated database retrieval system
