Ruminococcus lactaris: NQ541_04390
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Entry
NQ541_04390 CDS
T08757
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rlr
Ruminococcus lactaris
Pathway
rlr03030
DNA replication
rlr03430
Mismatch repair
rlr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ541_04390
03430 Mismatch repair
NQ541_04390
03440 Homologous recombination
NQ541_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlr03032
]
NQ541_04390
03400 DNA repair and recombination proteins [BR:
rlr03400
]
NQ541_04390
Enzymes [BR:
rlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NQ541_04390
DNA replication proteins [BR:
rlr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NQ541_04390
DNA repair and recombination proteins [BR:
rlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NQ541_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
Rv2179c-like
DNA_pol3_a_NII
RNase_H_2
tRNA_anti-codon
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
UWP66347
LinkDB
All DBs
Position
948498..953051
Genome browser
AA seq
1517 aa
AA seq
DB search
MEQVKSEKVFFNVFPTLKVGNELQMLFSDVEVKKITTNSGRDFLHIHILCRHLIQKKQIW
LMEQRIKEQLFGRAAVKIEIVEEFQLSELYTPQAILTEYRESLIEELRQTSVLAANMFAR
ADLRFEEGNLIHLELLDTIVSEGRKEEIVTLVERVLRERFRIDAKLLVAYKETDQEGTRE
YDEQRIQQEINAIFERRARQRGEEPERAAENQEIGSDTKKRQAEPGEKAAGGKEKAAAGK
EPSGRRKEFQKKEFKKKDYVRPLKLGDDPNLIYGRNFEDEPIRLDQVVEEMGEITFHGKI
ISLDTREIKNERTIIIFAVSDFTDTISVKMFIKNEQLAEILGSLKKGGFVKIKGVTTIDK
FDGELTIGSVTGIKKIGDFTVKREDLNPLKRVELHCHTKMSDMDGVSEVKDIVKRAHDWG
HPAIAITDHGVAQAFPDANHYIETLDKDDPFKVLYGVEGYVVDDLTKIAVHAGTQTLDDT
YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDRFSTFVNPQRPIPFEITNLTSITDEMV
LEADPIENVLPQFLEFVGDGVLVAHNASFDVGFIEQNCRYQEIEYRFTYVDTVAMARVLL
PTLSKYKLNLVAKTLGISLENHHRAVDDAGATAEIFVKFVEMLKKDHITDLKGINRFGER
NVNAIRKMATHHIIILAKNDIGRYNLYQLISESHMTYYGRRPRIPKSLLNEHREGLVIGS
ACEAGELYKAILEERPAETIAELADFYDYYEIQPIGNNRFMIGSSKVKNVNSEEDLQEIN
RKIVELGEQFKKPVVATCDVHFLDPEDEVYRRIIMAGKGFDDADTQPPLFLRTTDEMLEE
FAYLGSAKAREVVIDNPQKIAKMIEKISPVNPNKCPPVIQDSDQELRDICYRKAHEMYGE
DLPVQVSSRLEKELNSIISNGYAVMYIIAQKLVWKSNADGYLVGSRGSVGSSFVATMSGI
TEVNPLSPHYYCEKCHYSDFDSEEVRAFAGGCGYDMPDRMCPKCGAKLIKAGFDIPFETF
LGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAYGFVKNYYEE
RGQRKRRCEIERVTEGCTGIRRSTGQHPGGIVVLPHGHSINEFTPVQHPANDMECGITTT
HFDYHSIDHNLLKLDILGHDDPTMIRTLEDYITSDAMPNEYNAEHPFIATEIPLDDKRVI
ELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSHGTN
VWLGNAQELVKSGTATISTAICTRDDIMIYLINQGVESALAFTIMESVRKGKGLKPEWEE
AMKAQNVPDWYIWSCKKISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFSIRADAF
SYEIMCQGREKLDYYMKDYKRRSDTLTKKEQDTMKDMKIVQEMYARGFEFVPVDLYKAKA
KMFQIVDGKLMPSFASIEGMGDKAAEAVEEAGKDGPYLSLDDFRQRTKVSKTVIDLMSEL
GLFGNLPKSNQLSLFDF
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
ttggaacaggtaaaaagtgaaaaagtattttttaatgtatttccgacgctgaaagtcggg
aacgaactgcagatgctcttttcggatgtagaagttaagaagatcacgactaattcaggt
cgtgattttctgcatatacatatcctttgcaggcatctgatacagaagaagcagatctgg
ctgatggaacagcggatcaaggaacagttatttggaagagccgcagtaaagatcgaaatc
gtggaagagtttcaactgtcggagctttatacgccacaggcgattctgacggagtacagg
gaaagtctgatcgaagagctgcggcagaccagtgtacttgctgcaaatatgtttgcaagg
gcagatctccggtttgaagagggaaatctgatccacctggaactgctggacacgatcgta
tcagaaggacggaaagaagaaatcgtcacactggtggaacgggttctgcgggaacggttc
cgcatagatgcaaaattactggtagcttataaagagacggatcaggaaggcacaagagag
tacgatgagcagcggattcagcaggaaatcaatgcgatctttgaacgtcgtgcaaggcag
cgtggtgaagaacctgagagggcagcggaaaatcaggaaataggatcagatacaaagaag
aggcaggccgaaccgggtgaaaaggcagcaggtggaaaagaaaaagctgctgcaggaaag
gaaccatcaggcaggagaaaagaatttcagaagaaggaatttaaaaagaaagattatgta
cgcccactgaagctgggagatgatccgaacctcatctatggcaggaattttgaagatgag
ccgatccgcttggatcaggtcgtggaagaaatgggagaaattacctttcatggtaagatc
atcagtctggatacccgtgagatcaagaatgaacggacgatcatcatttttgcggtcagt
gattttacagatacgatcagcgtgaaaatgttcattaaaaatgagcaactggcagagatt
ctcggaagtctgaaaaaaggcggttttgtcaagatcaaaggagtcactaccattgataag
tttgacggggaactgacgatcggatctgtcaccggaataaaaaaaatcggtgatttcacg
gtcaaacgagaggatctgaacccgttaaagagagtggaactccactgccataccaaaatg
agtgatatggatggtgtttcagaagtaaaagatatcgtaaagagggctcatgactgggga
caccctgctattgcgatcacggatcacggggtagcacaggcattcccggatgccaaccac
tatattgagacactggacaaggacgatccgtttaaggtactttacggggtggaaggctat
gtagtagatgacctgaccaagatcgcggttcatgcaggaacgcagacgctggatgacacg
tatattgtgttcgacattgagacgaccggttttagtgccatccgggataagatcattgag
atcggggcagtgaaagttgtaaacggagagatcgtggaccggttcagtacgtttgtcaat
ccgcagcgtccgatcccgtttgagatcacgaatctgaccagtattacggatgaaatggta
ctggaagcggatccgattgagaatgtacttccacagttcctggaatttgtcggggatgga
gtcctggttgcccataatgcttcgttcgatgtgggatttattgaacagaactgccggtat
caggagatagaatacagatttacttatgtggatacggtggcaatggcgagagttcttttg
ccgacgctgtcaaaatataagctgaacctggtggcgaagacactggggatttccctggaa
aaccatcaccgtgcggtagatgatgcaggggcgacagcggagatttttgtgaaatttgta
gagatgctgaagaaggatcatattacagatcttaagggcatcaaccggtttggagagcgg
aatgtgaatgcgatccgcaaaatggcaacgcatcatatcatcattcttgcgaaaaatgac
atcggaagatacaatctgtaccagcttatttcagaatctcatatgacctattatggaaga
cggccgagaatcccgaaaagtctgctcaatgagcatcgggaggggctggtcatcggaagt
gcatgtgaagcgggtgagctgtataaggcaatcctggaagaaaggccggcagaaaccatt
gcggaacttgcggacttttatgattattatgagatccagccgatcggtaataaccggttt
atgatcgggagcagcaaggtgaaaaatgtcaattcagaggaggatctgcaggagatcaac
cggaagatcgtagaactgggtgagcagttcaaaaagccggtcgtggcaacgtgtgatgtg
catttccttgacccggaagatgaagtctaccgaaggatcatcatggcgggaaaaggattt
gatgatgcggatacccagccaccgctgttcctgcggacaaccgatgagatgctggaagaa
tttgcctatcttggatctgcaaaggcaagagaagtggtcattgacaacccgcagaagatc
gcaaaaatgatagaaaagatctcgccggtcaatccgaacaaatgcccgccggtcattcag
gattcggatcaggaactgagagatatctgttacaggaaagctcatgagatgtacggggaa
gacctgccggtacaggtttcttccagactggaaaaggaattaaattccattatttccaac
ggatatgccgttatgtatatcattgcacagaaactggtatggaagtccaatgcggacgga
tacctggttggttcacgtggatcagtaggatcttcgtttgtagcaacgatgtcaggaatt
acggaggtaaatccactcagtccacattattattgtgaaaaatgtcattacagtgatttc
gattccgaggaagtacgtgcttttgcaggaggctgtggatatgatatgcctgaccgtatg
tgtccgaagtgcggagcgaagctgatcaaggcgggatttgacatcccattcgagacattc
cttggatttaagggggataaagagccggatatcgacctgaacttttcaggagattatcag
gcaaaagctcataaatatacagaagtattgtttggtgagggacatacgttcaaagccgga
acgatcggaacactggcggacaagactgcctacggatttgtgaaaaattattatgaagag
cgtggacagaggaaaagaagatgtgagattgagcgtgtgacggaagggtgtaccggaatc
cgcagaagtaccgggcagcatccgggaggaatcgttgtacttccgcatggtcacagtatc
aatgagtttacaccggtgcagcatcctgccaatgatatggagtgcgggatcactacgacc
cattttgattatcattccattgaccataaccttttaaagctcgatattctcggacatgat
gatccgaccatgatccgaacgctggaagattatatcacctcggatgccatgccgaatgag
tacaatgcagagcatccgttcattgcgacagagatccccctggacgataagcgggtgatc
gagctgttccacggaacagaagtactgggaattaaaccggaggatatcgacggatgtaag
atcggaagtctgggaatcccggagtttggtacagatttcgttatccagatggtgcaggat
accaagcctcagaccctgtcagacctgatccgtatttccggtctgtcccacgggacaaat
gtatggcttggaaatgcacaggagcttgtcaaatcagggacggcaacgatttctaccgca
atctgtacccgtgatgatatcatgatctacctgattaatcagggcgtggaaagtgctctc
gcatttacgatcatggaaagtgtgcgaaagggaaaaggactgaaaccggaatgggaagag
gcgatgaaggcacagaatgtgccggactggtatatctggtcgtgcaaaaagatcagttat
atgttcccgaaagctcatgccgcagcttatgttatgatggcataccggattgcatactgc
aagatcaattatccgctggcatattatgcagcttacttcagtatccgtgcggacgcattc
tcttatgagatcatgtgtcaggggagagagaagctggattattatatgaaagattataag
cgacgcagtgataccctgacgaaaaaagagcaggatacgatgaaagatatgaagatcgtg
caggagatgtatgcccgtgggtttgagtttgttccggtggatctttataaggcgaaagca
aaaatgtttcagatcgtggacggaaaactgatgccgtcctttgcaagcattgaaggcatg
ggagataaagctgcggaggcagtcgaagaggcgggaaaggacgggccgtatctgtcactg
gatgatttccggcagcggacaaaagtcagcaagacagtgatcgatctgatgtcggagctg
ggactgtttggaaatctgccgaagagcaatcagttatcgttgtttgatttttaa
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integrated database retrieval system
