Ruminococcus lactaris: NQ541_04985
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Entry
NQ541_04985 CDS
T08757
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rlr
Ruminococcus lactaris
Brite
KEGG Orthology (KO) [BR:
rlr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NQ541_04985 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlr03021
]
NQ541_04985 (rpoD)
Transcription machinery [BR:
rlr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NQ541_04985 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Vir1p
Sigma70_r4_2
ATG17_like
Lin0512_fam
Motif
Other DBs
NCBI-ProteinID:
UWP66449
LinkDB
All DBs
Position
1062508..1063626
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AA seq
372 aa
AA seq
DB search
MEDITQKFMERLKELVALGKKKKSILDVQEINDFFNDMELNADQMEKVFDYLEANNIDVL
RISEDTEDDVDVDIDIIISDEDDVDVENIDLSVPEGVSIEDPVRMYLKEIGKVPLLSAER
EIELAQRMEEGDEEAKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFD
YHKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLP
EEIAKEMDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLL
KEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLRH
PSRSRKLRDYLD
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggaagatattactcagaaattcatggaaagactcaaagaactggttgcacttggaaag
aagaagaagagcattcttgatgttcaggagatcaatgattttttcaatgatatggaactg
aatgcggatcagatggagaaagtgttcgattatcttgaagcgaacaatattgatgttctg
cggatcagtgaagatacggaagacgatgtggatgtagatattgatattatcatatcggat
gaagatgatgtagatgttgagaatatcgacctgtctgtcccggagggcgtcagcattgaa
gatccggtgcgtatgtatctgaaagagatcggaaaagttccgcttctgagtgcggagcgt
gagatcgagcttgcacagagaatggaagaaggagacgaggaagcaaaaaaagaactggct
gaagcgaacttacgacttgtagtcagcattgcaaagagatatgtgggaagaggaatgctt
ttcctggatctgatccaggagggaaatctcggactgatcaaggctgtggagaaatttgat
tatcataagggatataagttcagtacttatgcaacgtggtggattcgtcaggcaatcacg
agagcaatcgcagaccaggccagaacgatccgtattccggttcatatggttgagacgatc
aataagctgatccgtgtatcaagacagcttcttcaggagctgggaagagagccattgccg
gaggagattgcaaaagaaatggatatgccggtggaacgtgtgcgagagatcctgaaaatt
tcacaggagccggtatcactggagactccgatcggagaggaagaggacagtcatcttgga
gactttatccaggatgataatgtgcctgttccggcagaggctgccgctcagacattactg
aaagaacagttagatgaagtgctggacacattaacagaaagagaacagaaggtactcaga
ctccgttttggtatgaatgacggtcgtgcaagaactctggaagaagtaggacgtgaattt
gacgttacgagagagcgtatccgtcagattgaggcaaaagcactcagaaagcttcgccat
ccgagcagaagcagaaagttaagagattatttggattaa
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integrated database retrieval system
