Ruminococcus lactaris: NQ541_06960
Help
Entry
NQ541_06960 CDS
T08757
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
rlr
Ruminococcus lactaris
Brite
KEGG Orthology (KO) [BR:
rlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rlr03009
]
NQ541_06960 (rimO)
Enzymes [BR:
rlr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NQ541_06960 (rimO)
Ribosome biogenesis [BR:
rlr03009
]
Prokaryotic type
ribosomal protein modification factors
NQ541_06960 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Mur_ligase_C
TRAM
TMF_TATA_bd
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
UWP64507
LinkDB
All DBs
Position
complement(1472487..1473809)
Genome browser
AA seq
440 aa
AA seq
DB search
MKILFISLGCDKNLVDTEVMLGLLASKGYEMTDDEQEADIIVINTCCFIHDAKEESIQNI
LEMAELKKEGKVKALIVTGCMAERYKDEILEEIPEVDEVLGTTAYDKILDAVDAALEGNQ
EVILSDIDALPLPETKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKVRGNYRSVPMERLVN
EARELAEQGVKELILVAQETTLYGKDLYGEKSLHKLVKELCNISGIRWIRILYCYPEEIT
DELIQVMKEEPKVCHYLDLPIQHANDTILKRMGRRTTKQELVHIVEKLRSEIPDICLRTT
LITGFPGETAEQHEELMQFVDEMEFDRLGVFTYSPEEDTPAAGMPEQIEEEVKEDRQAEI
MELQQEIAFDKAEDMIGREVLVMIEGKVADENAYVGRTYRDAPNVDGLIFINTDEELLSG
DFARVKVTGALDYDLIGELL
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaagatactttttatctctctgggatgcgacaaaaacctggttgatacagaggttatg
ctgggattactggcatccaaaggatatgagatgacagatgatgagcaggaagcggatatt
atcgtgatcaatacctgctgctttattcatgatgccaaggaagaaagtattcagaatatc
ctagagatggcagaactgaaaaaagaaggaaaagtaaaagcactgatcgtgacggggtgc
atggcagagcgttataaagatgagattctggaagaaataccggaagtagacgaagtactt
ggaacgacggcatatgataaaatactggatgcggtagatgcagcacttgaaggaaatcag
gaagtgatcctttcggatattgatgcactgccactgccggagacaaagcgtcttgttaca
accggaggacattttgcctatctgaagatcgcagagggatgtgacaagcattgcacatat
tgtattattccaaaagtaagaggaaattataggagtgttccgatggagcgtcttgtgaat
gaagccagggaactggcagagcagggggtaaaagagctgatccttgtggcacaggagacg
acgctgtatggaaaggatctttatggagaaaagtcactgcataagctggtcaaagaattg
tgtaatatcagcggaatccgatggatccgtattttatactgttatccggaagagattaca
gatgaactgatccaggtgatgaaggaagaaccgaaagtctgccattatcttgatcttccg
atccagcatgcgaatgatacgattctgaagcggatgggcagaaggactacgaagcaggaa
ctggttcatatagtggaaaagctgagaagtgagattcctgatatctgtctgcgtacaaca
ctgatcacaggattcccgggagaaaccgcagaacagcatgaagaactgatgcagtttgtg
gacgagatggagtttgaccgtctgggagtctttacttattcgccggaagaggatacaccg
gcagcaggaatgccggagcagatcgaagaagaagtaaaagaagaccggcaggcagagatc
atggaactgcagcaggagatcgcatttgacaaggcggaagacatgatcggaagagaggtt
ctggttatgatcgaaggaaaagttgctgatgaaaatgcatatgtcggaagaacttacaga
gacgctccgaatgttgacggattgatttttatcaatacagatgaagagttactttcaggt
gatttcgcaagagtaaaagtaacaggtgctttggattatgatttgataggagagttatta
tga
DBGET
integrated database retrieval system
