Ruminococcus lactaris: NQ541_10850
Help
Entry
NQ541_10850 CDS
T08757
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rlr
Ruminococcus lactaris
Pathway
rlr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rlr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ541_10850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlr03021
]
NQ541_10850 (rpoC)
03400 DNA repair and recombination proteins [BR:
rlr03400
]
NQ541_10850 (rpoC)
Enzymes [BR:
rlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ541_10850 (rpoC)
Transcription machinery [BR:
rlr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ541_10850 (rpoC)
DNA repair and recombination proteins [BR:
rlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ541_10850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UWP65213
LinkDB
All DBs
Position
complement(2336686..2340402)
Genome browser
AA seq
1238 aa
AA seq
DB search
MPNNNEQQYEPLTFDAIKIGLASPEKIMEWSKGEVTKPETINYRTLKPEKDGLFCERIFG
PSKDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIALAAPVSHIWYFKGIPSR
MGLILDISPRTLERVLYFASYIVLDKGETNLAYKQVLSEAEYQEAKEKYGRNAFRVGMGA
ESIKELLESIDLEKEYAELQAGLENATGQKRARIVKRLEVVEAFRESGNRPEWMILTAIP
VIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVANGTAHNIKNAKKMVERLQPEVWDVLEDVIKEHPVML
NRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSQEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQLRPGSKGEGMFFKSVNEAILAYENGYIT
LHSQIKVRVAKTLPNGEEMTGIIDATLGRLLFNEIIPQDLGFVDREVEGNELKMEIDFHV
GKKQLKQILEKVINTHGATATAEVLDDVKAIGYKFSTRAAMTVSISDMTVPPQKPEMIAK
AQETVDRITKNYKRGLITEEERYKEVVETWKATDDMLTEALLTGLDKYNNIFMMADSGAR
GSDKQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGMADTALRTA
DSGYLTRRLVDVSQELIIHDTDCVKPGQPIPGMYVSAFMDGNEEIESLQERITGRFSAED
IKDKDGNVIVKANHMITPRRAERVMKKGVDENGNALEQVKIRTILTCKCKSGVCSRCYGA
NMATGEAVQVGEAVGIMAAQSIGEPGTQLTMRTFHNGGVAGDDITQGLPRVEELFEARKP
KGLAIITEFAGRATISDTKKKREVIVTNEETGESKAYLIPYGSRIKIQDGAMLGAGDELT
EGSVNPHDILKIKGLRAAQDYMLQEVQRVYRLQGVEINDKHIEVIVRQMLKKIRIEEKGD
TEFLPGTMVDVLEFEEVNEQLVAEGKEPATGEQIMLGITKASLATESFLSAASFQETTKV
LTEAAIKGKVDHLVGLKENVIIGKHIPAGTGMKKYRDVKLNTDLQMEDELDLDDEISLED
LDADLDLNEEIDLENTEETAGESDAAEEVSEKADTTEE
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataacaatgaacaacaatacgaaccgttaacatttgatgcgataaagatcggc
ctggcttcacctgaaaagatcatggaatggtcaaaaggtgaggttacgaagccggagaca
atcaactacagaacactgaaaccggaaaaagacggacttttctgtgagagaatcttcgga
ccaagtaaagactgggagtgccactgtggaaagtacaaaaagatccgttataaaggtgtc
gtgtgcgaccgctgtggtgttgaggtaacaaaggcaagtgtccgccgtgagcgtatgggt
catatcgctctggcggcaccggtatcgcatatctggtatttcaagggcatcccgagccgt
atgggtctgatccttgatatctctccgagaactctggagagagtcctgtatttcgcttct
tatattgtgcttgacaaaggcgagacaaatcttgcctacaagcaggtgctttctgaagca
gaataccaggaagcaaaagaaaaatatggaagaaatgcattccgtgtagggatgggtgca
gaatccattaaggaacttcttgagtccatcgaccttgagaaggaatatgcagaacttcag
gcaggactggagaatgcgacaggacagaaacgtgcgagaatcgtaaagcgtctggaagtt
gtagaagcattccgcgagtccggcaacagaccggagtggatgatccttacagcaatcccg
gttatcccaccggatctgcgtcctatggtacagcttgatggtggacgtttcgctacatct
gacctgaatgatctgtacagaaggatcatcaacagaaataaccgtctgaagagactcctt
gagctgggagcaccggacattatcgtaagaaacgagaagcgtatgcttcaggaagctgtt
gacgcactgatcgacaacggccgtcgtggacgcccggtaacaggacctggtaacagagca
ttgaagtctctgtctgatatgctgaaaggtaagtccggacgtttccgtcagaacctgctt
ggtaagcgtgttgactattcaggacgttctgttatcgtcgttggaccggaactgaagatc
tatcagtgtggtctgccgaaagagatggcaatcgagctgttcaaaccatttgttatgaaa
gaacttgtagcaaacggaacagcacataatattaaaaatgcaaagaagatggttgagaga
cttcagccggaggtatgggatgtgcttgaagatgtgatcaaggagcatccggttatgctg
aaccgtgcccccacactgcacagacttggtatccaggcatttgagccgatccttgtagaa
ggtaaggcgatcaagcttcatccgctggtatgtacggcttacaatgccgacttcgatgga
gaccagatggctgtccatgtaccactgtcacaggaagcacaggcagagtgccgtttcctg
ctcctttcaccgaacaacctgctgaagccgtctgatggtggtccggtagctgttccttca
caggatatggtacttggtatttactatctgactcagttaagaccgggatcaaagggcgag
ggcatgttcttcaagagcgtgaacgaggcaattcttgcttatgagaatggatatatcaca
ctgcactcacagatcaaggtgcgtgtggcaaagactcttccaaatggagaagagatgacc
ggaattattgatgcaacactgggacgtcttctctttaatgagatcattcctcaggatctt
ggtttcgtagaccgtgaggttgagggaaatgaactgaagatggagatcgacttccatgtt
ggtaagaagcagctcaagcagatccttgagaaagtaatcaatacacatggggctacagca
actgcagaagtactggatgatgtaaaagccatcggatataagttctctacaagagcggca
atgactgtatcgatttccgatatgactgtaccaccgcagaagcctgagatgatcgcaaaa
gctcaggaaactgtagaccgtattacaaagaactacaagcgtggtcttatcacagaggaa
gagcgttataaagaagttgttgagacatggaaagcaaccgatgatatgctgacagaggca
ctgctgacaggtcttgataagtataataatatcttcatgatggcagactcaggagcccgt
ggatctgataagcagatcaagcagcttgccggtatgcgtggactgatggctgatacaacc
ggtcgtacgatcgagctgcctatcaagtcaaacttccgtgaaggtcttgacgtactggag
tatttcatgtctgcccacggagccagaaagggaatggcagatactgctcttcgtacagcc
gattcaggatacctgacaagacgtcttgtagacgtatcacaggaactgatcattcacgat
acagactgcgtaaaaccgggtcagccgattccgggaatgtatgtatctgcattcatggat
ggaaatgaagagatcgaaagtcttcaggaacgtattacaggacgtttctctgcagaagac
attaaagataaagatggtaatgtcattgtaaaggcaaaccatatgattactccacgccgt
gctgagcgtgtgatgaagaagggcgttgacgagaacggaaatgcacttgagcaggttaag
atccgtacaatccttacctgtaagtgtaagagtggtgtatgctccagatgttatggtgcg
aacatggcaacaggagaagccgtacaggttggtgaggcagtcggaattatggcagcacag
tccatcggagagccaggtacacagcttaccatgcgtacattccataacggtggagttgcc
ggagacgatatcactcagggtcttcctcgtgtcgaggagctttttgaggcaagaaagccg
aagggacttgcaatcatcacagagtttgccggacgtgcaacgatcagtgatacaaagaaa
aagcgtgaagttattgttacaaatgaagagacaggcgaatcaaaagcttaccttatccct
tatggatctcgtattaagatccaggacggagcaatgctcggtgccggagatgagcttaca
gaaggtagtgtaaatccacatgacatcctgaagatcaaaggccttcgtgcagcacaggac
tacatgcttcaggaagtacagcgtgtataccgtctgcagggtgttgagatcaatgataag
catatcgaggtcatcgttcgtcagatgctgaagaagatccgaatcgaggagaagggtgat
acagagttcctgccgggaacaatggtagacgtccttgaattcgaggaagtcaacgagcag
cttgttgcagaaggaaaagagccggctaccggtgagcagatcatgcttggtatcaccaag
gcatctcttgctacagaatccttcctttcagccgcttctttccaggagacaacaaaggtt
ctgacagaggcagcaatcaagggtaaagttgaccaccttgtaggtctgaaggagaacgtt
atcatcggtaagcatattcctgccggaacaggtatgaagaagtaccgtgatgtaaaatta
aatacagatcttcagatggaagatgaactggatcttgatgatgagatcagcctggaagat
ttagatgcagatctggatctgaacgaagagattgatcttgaaaatacagaagagacagcc
ggagaaagtgatgccgcagaggaagtatcagaaaaagcagatacgactgaagaataa
DBGET
integrated database retrieval system
