Rhizobium lusitanum: HB780_15645
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Entry
HB780_15645 CDS
T07787
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rls
Rhizobium lusitanum
Pathway
rls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HB780_15645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rls03400
]
HB780_15645 (mfd)
Enzymes [BR:
rls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HB780_15645 (mfd)
DNA repair and recombination proteins [BR:
rls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HB780_15645 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QND47155
LinkDB
All DBs
Position
360159..363659
Genome browser
AA seq
1166 aa
AA seq
DB search
MIPGFDAKKLLAASEPLTVGHVPAGMEPFLLAELARTGEPVAYVMSDGQHMADVEQMLGF
LAPEIPVLTLPAWDCLPYDRVSPSSHTSARRLAALSGLIAYHRKPHAAIVLVTVNAMLQK
VAPQDVIESLAFSARPGNQVRMDDVAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRSFDPASQRTTGQIRSLDLNPMSEVTLTPDTISRFRKNYLSSFG
AATRDDALYVAVSEGRRYAGMEHWLPLFYEKLETVFDYLRGFRLVTDHTVREAAEERSKL
VFDYYDARLNSGQPAKSQMSQGTPYKPVTPGQLYLDGGTLSKALDAFNAIRISPFNEHEG
EARRVINIDARQGPRWARSATENADAERVNVFDSVVKHIAERRAAGGKVMITAWTEGSLD
RLLQVLAEHGLARVKTIEAIKDLATLAKGEAAAAVLSLEAGFEVGDLVVIGEQDILGDRM
VRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELRYADDA
KLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMAGALIRIAAERLTR
HAPVLSTPDGLYDEFAARFPYDETEDQMTAIEAVRDDLGAGRPMDRLVCGDVGFGKTEVA
LRAAFVAAMNGAQVAVVVPTTLLARQHFKTFTDRFRGLPIRIQQASRLVGAKELALTKKE
VSEGKTDIVVGTHALLGAGIQFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLADIHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTTAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIQDTGWS
PQISVGTPVMIPDAYVPDLHLRMALYRRLGEITEIKEIDGFGAEMIDRFGPMPIEVQHLL
KIVYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIAKQGTMAKIRPDHSVFL
TRDLPTPEKRLQGAAVVMTQLAELAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgatcccagggttcgacgcgaagaaactgctcgcggcgagcgagccgctgaccgttggc
catgttccggcgggcatggagcccttcctgctggcagaattggcacgaaccggcgagccg
gtcgcctatgtgatgtcggacggccagcacatggccgatgtcgaacagatgctcggcttc
cttgcgcccgaaatcccggttttgacgctgcccgcctgggactgccttccctatgaccgt
gtgtcgcccagctctcacacctcggctcgccgtctcgcggccctgagcggattgatcgcc
taccatcgcaagccgcatgcggcgatcgtattggtgacggtcaatgccatgctgcagaag
gtggcgccgcaggatgtgattgagagtctcgctttttccgcccggcctggtaatcaggtc
cgtatggacgatgtcgccggtcgcctggagcgcaacggcttcgaccgcgtcgcgaccgtg
cgcgaagtcggtgaatatgccgtgcgcggcggcatccttgatgtcttcgtgccgggaacc
gaagagccggtgcgactcgatttcttcggcgacacgctggaaagcattcgcagcttcgat
cccgccagccagcgcacgacgggtcagatccgctctctcgatctcaatcctatgagcgaa
gtgacgctgacgccggatacgatcagccgtttccgcaagaactacctctcctctttcggt
gctgctacgcgcgacgacgcgctctatgtcgccgtttccgaaggccgtcgttatgccggt
atggaacattggctgccgctgttctacgagaagctggagacggttttcgactatctcagg
ggcttccggctggtcacggatcatacggtgcgtgaggccgccgaggagcgctccaagctc
gttttcgattattacgatgcccgcctgaattccggacagccggccaagagccagatgtcc
cagggcacgccctacaagccggtaacgccaggccagctctatctcgacggcggcaccctc
tccaaggcgctcgatgccttcaatgccatccgtatctcgcctttcaacgagcatgagggc
gaggctcgccgcgtcatcaacatcgatgcccgtcagggcccgcgatgggcgcgctccgcg
accgaaaacgctgacgccgaacgcgtcaacgtcttcgattccgtggtcaagcacatcgcc
gaacgccgcgccgccggcggcaaggtaatgattacggcctggacggaaggctccctcgac
cgccttttgcaggtacttgccgaacacgggcttgcccgcgtcaagacgatcgaggcgatc
aaggatcttgccaccttggcaaagggcgaggcggcggcggccgttctcagcctggaagcc
ggctttgaggttggcgatctcgtcgtcatcggcgagcaggacattctcggtgaccgcatg
gtgcgccgctccaagcgccgtaagcgcgctgccgatttcatctcggaagtggccggcctc
gacgagggctcgatcgtcgtccatgccgaacacggcatcggccgtttcgtcggtctgaga
accatcgaggcagccggcgcgccgcacgcatgtctcgagctgcgttacgccgatgacgcc
aagctgttcctgccggtcgaaaacatcgatcttctttcgcgttatggcggcgagggcacc
gaggcgcaactcgacaagctcggcggcggcgcatggcagatgcgcaaggccaagctcaag
aagcgtctgctggacatggccggcgcgttgatccgcatagcggccgagcgcctaacgcgg
catgcaccggtgctcagcaccccggatggcctctatgacgagttcgccgcccgcttcccc
tatgacgagaccgaagaccagatgaccgccatcgaagccgtgcgcgatgatctcggcgcc
ggtcgtccgatggaccgcctcgtctgcggcgacgtcggtttcggcaagacggaagtggcg
ctgcgcgccgccttcgttgccgccatgaacggcgcgcaagtcgccgtcgtcgtgccgacg
acgctgctggcccgtcagcacttcaagactttcactgaccgcttccgcggcctgccgatc
cgcatccagcaggcgtcccgcctcgttggcgccaaggagctggcgctgaccaagaaggaa
gtttccgaaggcaagaccgacatcgtcgtcggcacgcatgcgctgctcggcgccggtatc
cagttcgccaatctcggcctgctggtcatcgacgaggagcagcatttcggcgtcaagcac
aaggagcgcctgaaggagctgaagagcgacgtgcatgtgctgacgctctcggcgacgccg
atcccgcgcacgctgcagctcgccatgaccggcgtgcgcgaactgtcgctgatcaccacg
cctccggtcgaccgcatggcagtgcgcaccttcatctcgcccttcgattcgctggtgatc
cgcgaaacgctgatgcgcgagcattatcgcggcggccagagcttctatgtttgcccgcgc
cttgccgatctcgccgacatccatgccttcctgcaatcggacgtgccggagctgaaggtg
gctgtcgcccatggccagatgccggccggcgagctcgaggacatcatgaacgccttctat
gaaggccgctacgatgtgctgctgtcgaccaccatcgtcgaatccggcctcgatgtgccc
acggccaacacgctgatcgtgcaccgcgccgacatgttcggccttgcgcagctctatcag
ctgcgtggccgtgtcggtcgttccaaggttcgtgccttcgcgctcttcaccctgccggtt
aacaaggtgctgacgacgacagccgagcgccgcctgaaggtgctgcaatcgctcgacacg
ctcggcgccggcttccagctcgccagccacgacctcgacattcgcggcgccggcaatctg
cttggcgaggaacagtccggccatatcaaggaagtcggcttcgaactctatcagcagatg
ctcgaagaagcggtcgccgaggtcaagggcgtcgacgagatccaggacaccggctggtca
ccgcagatctccgtcggtacgcctgtgatgatccccgatgcctacgtgccggacctgcat
ctgcgcatggcgctctatcgccgcctcggcgagatcaccgaaatcaaggaaatcgacggc
ttcggcgcggaaatgatcgaccgtttcggaccgatgccgatcgaggtgcagcatctcctg
aagatcgtctacatcaagtcgctctgccgcatcgccaatgtcgaaaagctggacgccggc
ccgaagggcgtcgtcgtgcagttccgcaacaaggaattccccaacccggccaatctcgtc
ggctatatcgccaagcagggcaccatggcgaagatccgcccggatcacagcgtgttcctg
acgcgggacttgccgacgcctgagaagaggctgcagggggcggctgtggttatgacgcag
ttggcggaattggcgaagtag
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